data_79C
#

_chem_comp.id                                   79C
_chem_comp.name                                 "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H35 F2 N7 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-09-15
_chem_comp.pdbx_modified_date                   2017-02-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       543.609
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    79C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5TA8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
79C  C4   C1   C  0  1  Y  N  N   0.084  21.079  70.063   3.116  -2.528   0.226  C4   79C   1  
79C  C5   C2   C  0  1  Y  N  N  -1.046  20.800  69.288   3.584  -1.217   0.096  C5   79C   2  
79C  C6   C3   C  0  1  Y  N  N  -1.504  21.777  68.382   2.690  -0.146   0.186  C6   79C   3  
79C  C7   C4   C  0  1  Y  N  N  -0.855  22.998  68.254   1.351  -0.383   0.402  C7   79C   4  
79C  C8   C5   C  0  1  Y  N  N   0.279  23.272  69.030   0.885  -1.687   0.532  C8   79C   5  
79C  C10  C6   C  0  1  Y  N  N   0.922  25.505  68.014  -1.413  -0.991   0.340  C10  79C   6  
79C  C13  C7   C  0  1  Y  N  N   0.840  27.568  66.259  -3.215   0.822  -0.451  C13  79C   7  
79C  C15  C8   C  0  1  N  N  N   0.708  30.019  66.004  -4.244   2.266  -2.207  C15  79C   8  
79C  C21  C9   C  0  1  N  N  N  -0.350  26.300  63.698  -5.397   0.341   1.695  C21  79C   9  
79C  C24  C10  C  0  1  N  N  N  -3.156  25.623  64.251  -5.382  -1.276  -1.744  C24  79C  10  
79C  C26  C11  C  0  1  N  N  N  -2.513  23.289  63.820  -7.814  -1.347  -1.566  C26  79C  11  
79C  C28  C12  C  0  1  Y  N  N  -0.023  26.454  66.107  -3.610  -0.308   0.274  C28  79C  12  
79C  C1   C13  C  0  1  N  N  N   2.802  21.553  70.974   2.278  -5.084   0.457  C1   79C  13  
79C  O2   O1   O  0  1  N  N  N   1.839  22.581  70.703   1.314  -4.035   0.564  O2   79C  14  
79C  C3   C14  C  0  1  Y  N  N   0.739  22.300  69.939   1.772  -2.760   0.438  C3   79C  15  
79C  N9   N1   N  0  1  N  N  N   1.008  24.477  68.956  -0.472  -1.923   0.752  N9   79C  16  
79C  N11  N2   N  0  1  Y  N  N   1.736  26.545  68.174  -1.014   0.057  -0.365  N11  79C  17  
79C  C12  C15  C  0  1  Y  N  N   1.720  27.579  67.334  -1.880   0.976  -0.773  C12  79C  18  
79C  N14  N3   N  0  1  N  N  N   0.766  28.685  65.391  -4.172   1.776  -0.828  N14  79C  19  
79C  C16  C16  C  0  1  N  N  N   0.672  28.611  64.037  -5.025   2.232   0.115  C16  79C  20  
79C  O17  O2   O  0  1  N  N  N   0.591  29.637  63.382  -5.908   3.009  -0.182  O17  79C  21  
79C  C18  C17  C  0  1  N  N  N   0.719  27.303  63.302  -4.871   1.765   1.538  C18  79C  22  
79C  F19  F1   F  0  1  N  N  N   0.526  27.569  61.943  -3.516   1.798   1.885  F19  79C  23  
79C  F20  F2   F  0  1  N  N  N   1.979  26.721  63.494  -5.588   2.618   2.384  F20  79C  24  
79C  N22  N4   N  0  1  N  N  N  -0.932  26.398  65.042  -4.946  -0.504   0.572  N22  79C  25  
79C  C23  C18  C  0  1  N  N  N  -1.928  25.314  65.149  -5.790  -0.300  -0.613  C23  79C  26  
79C  C25  C19  C  0  1  N  N  N  -3.739  24.227  63.915  -6.669  -1.363  -2.601  C25  79C  27  
79C  C27  C20  C  0  1  N  N  N  -1.374  23.975  64.594  -7.255  -0.671  -0.303  C27  79C  28  
79C  N29  N5   N  0  1  Y  N  N   0.059  25.462  67.002  -2.686  -1.179   0.659  N29  79C  29  
79C  C30  C21  C  0  1  N  N  N  -1.725  19.487  69.424   5.019  -0.963  -0.136  C30  79C  30  
79C  O31  O3   O  0  1  N  N  N  -1.739  18.906  70.492   5.796  -1.895  -0.213  O31  79C  31  
79C  N32  N6   N  0  1  N  N  N  -2.306  18.924  68.338   5.468   0.301  -0.261  N32  79C  32  
79C  C33  C22  C  0  1  N  N  N  -3.003  17.632  68.345   6.893   0.553  -0.491  C33  79C  33  
79C  C34  C23  C  0  1  N  N  N  -4.234  17.763  67.431   7.068   1.902  -1.193  C34  79C  34  
79C  C35  C24  C  0  1  N  N  N  -4.944  16.419  67.234   8.560   2.187  -1.375  C35  79C  35  
79C  N36  N7   N  0  1  N  N  N  -3.984  15.434  66.708   9.220   2.208  -0.064  N36  79C  36  
79C  C37  C25  C  0  1  N  N  N  -4.659  14.165  66.396  10.626   2.615  -0.188  C37  79C  37  
79C  C38  C26  C  0  1  N  N  N  -2.838  15.224  67.618   9.106   0.908   0.609  C38  79C  38  
79C  C39  C27  C  0  1  N  N  N  -2.059  16.532  67.834   7.630   0.583   0.851  C39  79C  39  
79C  H1   H1   H  0  1  N  N  N   0.451  20.342  70.762   3.805  -3.357   0.156  H1   79C  40  
79C  H2   H2   H  0  1  N  N  N  -2.375  21.573  67.777   3.049   0.867   0.086  H2   79C  41  
79C  H3   H3   H  0  1  N  N  N  -1.224  23.736  67.557   0.661   0.445   0.472  H3   79C  42  
79C  H4   H4   H  0  1  N  N  N   0.796  29.925  67.096  -4.921   1.634  -2.782  H4   79C  43  
79C  H5   H5   H  0  1  N  N  N   1.535  30.635  65.621  -4.613   3.291  -2.210  H5   79C  44  
79C  H6   H6   H  0  1  N  N  N  -0.251  30.496  65.753  -3.251   2.236  -2.656  H6   79C  45  
79C  H7   H7   H  0  1  N  N  N  -1.175  26.402  62.978  -5.027  -0.077   2.631  H7   79C  46  
79C  H8   H8   H  0  1  N  N  N   0.094  25.298  63.608  -6.486   0.361   1.715  H8   79C  47  
79C  H9   H9   H  0  1  N  N  N  -2.848  26.148  63.335  -4.557  -0.868  -2.327  H9   79C  48  
79C  H10  H10  H  0  1  N  N  N  -3.893  26.234  64.793  -5.120  -2.252  -1.335  H10  79C  49  
79C  H11  H11  H  0  1  N  N  N  -2.745  22.314  64.272  -8.658  -0.776  -1.953  H11  79C  50  
79C  H12  H12  H  0  1  N  N  N  -2.225  23.146  62.768  -8.125  -2.366  -1.338  H12  79C  51  
79C  H13  H13  H  0  1  N  N  N   3.610  21.962  71.598   3.033  -4.965   1.235  H13  79C  52  
79C  H14  H14  H  0  1  N  N  N   2.313  20.723  71.505   1.781  -6.047   0.576  H14  79C  53  
79C  H15  H15  H  0  1  N  N  N   3.222  21.185  70.026   2.755  -5.040  -0.522  H15  79C  54  
79C  H16  H16  H  0  1  N  N  N   1.683  24.615  69.681  -0.757  -2.738   1.192  H16  79C  55  
79C  H17  H17  H  0  1  N  N  N   2.384  28.417  67.487  -1.547   1.828  -1.347  H17  79C  56  
79C  H18  H18  H  0  1  N  N  N  -2.252  25.180  66.192  -5.720   0.732  -0.956  H18  79C  57  
79C  H19  H19  H  0  1  N  N  N  -4.279  24.255  62.957  -6.744  -0.503  -3.266  H19  79C  58  
79C  H20  H20  H  0  1  N  N  N  -4.421  23.892  64.711  -6.685  -2.292  -3.172  H20  79C  59  
79C  H21  H21  H  0  1  N  N  N  -1.043  23.333  65.424  -7.828   0.228  -0.076  H21  79C  60  
79C  H22  H22  H  0  1  N  N  N  -0.526  24.170  63.921  -7.295  -1.362   0.539  H22  79C  61  
79C  H23  H23  H  0  1  N  N  N  -2.257  19.422  67.472   4.848   1.044  -0.199  H23  79C  62  
79C  H24  H24  H  0  1  N  N  N  -3.333  17.383  69.364   7.306  -0.239  -1.116  H24  79C  63  
79C  H25  H25  H  0  1  N  N  N  -3.910  18.142  66.450   6.581   1.871  -2.168  H25  79C  64  
79C  H26  H26  H  0  1  N  N  N  -4.939  18.475  67.884   6.618   2.688  -0.586  H26  79C  65  
79C  H27  H27  H  0  1  N  N  N  -5.772  16.542  66.521   9.006   1.408  -1.993  H27  79C  66  
79C  H28  H28  H  0  1  N  N  N  -5.340  16.068  68.198   8.688   3.154  -1.862  H28  79C  67  
79C  H30  H30  H  0  1  N  N  N  -3.925  13.445  66.005  10.678   3.614  -0.621  H30  79C  68  
79C  H31  H31  H  0  1  N  N  N  -5.119  13.760  67.310  11.091   2.622   0.798  H31  79C  69  
79C  H32  H32  H  0  1  N  N  N  -5.438  14.341  65.640  11.152   1.912  -0.833  H32  79C  70  
79C  H33  H33  H  0  1  N  N  N  -3.210  14.863  68.588   9.549   0.134  -0.019  H33  79C  71  
79C  H34  H34  H  0  1  N  N  N  -2.164  14.472  67.181   9.631   0.945   1.564  H34  79C  72  
79C  H35  H35  H  0  1  N  N  N  -1.263  16.363  68.574   7.189   1.348   1.490  H35  79C  73  
79C  H36  H36  H  0  1  N  N  N  -1.612  16.851  66.881   7.547  -0.390   1.336  H36  79C  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
79C  F19  C18  SING  N  N   1  
79C  C18  F20  SING  N  N   2  
79C  C18  C21  SING  N  N   3  
79C  C18  C16  SING  N  N   4  
79C  O17  C16  DOUB  N  N   5  
79C  C21  N22  SING  N  N   6  
79C  C26  C25  SING  N  N   7  
79C  C26  C27  SING  N  N   8  
79C  C25  C24  SING  N  N   9  
79C  C16  N14  SING  N  N  10  
79C  C24  C23  SING  N  N  11  
79C  C27  C23  SING  N  N  12  
79C  N22  C23  SING  N  N  13  
79C  N22  C28  SING  N  N  14  
79C  N14  C15  SING  N  N  15  
79C  N14  C13  SING  N  N  16  
79C  C28  C13  DOUB  Y  N  17  
79C  C28  N29  SING  Y  N  18  
79C  C13  C12  SING  Y  N  19  
79C  C37  N36  SING  N  N  20  
79C  N36  C35  SING  N  N  21  
79C  N36  C38  SING  N  N  22  
79C  N29  C10  DOUB  Y  N  23  
79C  C35  C34  SING  N  N  24  
79C  C12  N11  DOUB  Y  N  25  
79C  C34  C33  SING  N  N  26  
79C  C38  C39  SING  N  N  27  
79C  C39  C33  SING  N  N  28  
79C  C10  N11  SING  Y  N  29  
79C  C10  N9   SING  N  N  30  
79C  C7   C6   DOUB  Y  N  31  
79C  C7   C8   SING  Y  N  32  
79C  N32  C33  SING  N  N  33  
79C  N32  C30  SING  N  N  34  
79C  C6   C5   SING  Y  N  35  
79C  N9   C8   SING  N  N  36  
79C  C8   C3   DOUB  Y  N  37  
79C  C5   C30  SING  N  N  38  
79C  C5   C4   DOUB  Y  N  39  
79C  C30  O31  DOUB  N  N  40  
79C  C3   C4   SING  Y  N  41  
79C  C3   O2   SING  N  N  42  
79C  O2   C1   SING  N  N  43  
79C  C4   H1   SING  N  N  44  
79C  C6   H2   SING  N  N  45  
79C  C7   H3   SING  N  N  46  
79C  C15  H4   SING  N  N  47  
79C  C15  H5   SING  N  N  48  
79C  C15  H6   SING  N  N  49  
79C  C21  H7   SING  N  N  50  
79C  C21  H8   SING  N  N  51  
79C  C24  H9   SING  N  N  52  
79C  C24  H10  SING  N  N  53  
79C  C26  H11  SING  N  N  54  
79C  C26  H12  SING  N  N  55  
79C  C1   H13  SING  N  N  56  
79C  C1   H14  SING  N  N  57  
79C  C1   H15  SING  N  N  58  
79C  N9   H16  SING  N  N  59  
79C  C12  H17  SING  N  N  60  
79C  C23  H18  SING  N  N  61  
79C  C25  H19  SING  N  N  62  
79C  C25  H20  SING  N  N  63  
79C  C27  H21  SING  N  N  64  
79C  C27  H22  SING  N  N  65  
79C  N32  H23  SING  N  N  66  
79C  C33  H24  SING  N  N  67  
79C  C34  H25  SING  N  N  68  
79C  C34  H26  SING  N  N  69  
79C  C35  H27  SING  N  N  70  
79C  C35  H28  SING  N  N  71  
79C  C37  H30  SING  N  N  72  
79C  C37  H31  SING  N  N  73  
79C  C37  H32  SING  N  N  74  
79C  C38  H33  SING  N  N  75  
79C  C38  H34  SING  N  N  76  
79C  C39  H35  SING  N  N  77  
79C  C39  H36  SING  N  N  78  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
79C  SMILES            ACDLabs               12.01  "c2c(C(=O)NC1CCN(CC1)C)ccc(c2OC)Nc3ncc4c(n3)N(CC(C(N4C)=O)(F)F)C5CCCC5"  
79C  InChI             InChI                 1.03   "InChI=1S/C27H35F2N7O3/c1-34-12-10-18(11-13-34)31-24(37)17-8-9-20(22(14-17)39-3)32-26-30-15-21-23(33-26)36(19-6-4-5-7-19)16-27(28,29)25(38)35(21)2/h8-9,14-15,18-19H,4-7,10-13,16H2,1-3H3,(H,31,37)(H,30,32,33)"  
79C  InChIKey          InChI                 1.03   DJNZZLZKAXGMMC-UHFFFAOYSA-N  
79C  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(ccc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5"  
79C  SMILES            CACTVS                3.385  "COc1cc(ccc1Nc2ncc3N(C)C(=O)C(F)(F)CN(C4CCCC4)c3n2)C(=O)NC5CCN(C)CC5"  
79C  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1CCC(CC1)NC(=O)c2ccc(c(c2)OC)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5"  
79C  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1CCC(CC1)NC(=O)c2ccc(c(c2)OC)Nc3ncc4c(n3)N(CC(C(=O)N4C)(F)F)C5CCCC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
79C  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide"  
79C  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "4-[[9-cyclopentyl-7,7-bis(fluoranyl)-5-methyl-6-oxidanylidene-8~{H}-pyrimido[4,5-b][1,4]diazepin-2-yl]amino]-3-methoxy-~{N}-(1-methylpiperidin-4-yl)benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
79C  "Create component"  2016-09-15  RCSB  
79C  "Initial release"   2017-02-22  RCSB  
##
