data_48C
# 
_chem_comp.id                                    48C 
_chem_comp.name                                  "5'-(D-alanylamino)-5'-deoxyuridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H18 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-12 
_chem_comp.pdbx_modified_date                    2015-09-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        314.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     48C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4Y64 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
48C OAZ O1  O 0 1 N N N 18.181 24.707 6.893  3.248  0.089  2.122  OAZ 48C 1  
48C CAU C1  C 0 1 N N N 17.563 24.122 7.785  3.292  -0.448 1.033  CAU 48C 2  
48C NAT N1  N 0 1 N N N 18.083 24.186 9.061  4.299  -1.296 0.752  NAT 48C 3  
48C CAV C2  C 0 1 N N N 17.461 23.547 10.158 4.362  -1.901 -0.452 CAV 48C 4  
48C OBA O2  O 0 1 N N N 17.965 23.663 11.286 5.273  -2.668 -0.707 OBA 48C 5  
48C CAX C3  C 0 1 N N N 16.309 22.801 9.929  3.361  -1.634 -1.417 CAX 48C 6  
48C CAY C4  C 0 1 N N N 15.795 22.737 8.624  2.362  -0.779 -1.108 CAY 48C 7  
48C NAW N2  N 0 1 N N N 16.449 23.395 7.535  2.332  -0.191 0.126  NAW 48C 8  
48C CBB C5  C 0 1 N N R 15.917 23.348 6.132  1.245  0.733  0.463  CBB 48C 9  
48C OBE O3  O 0 1 N N N 14.596 22.779 6.028  -0.036 0.119  0.203  OBE 48C 10 
48C CBD C6  C 0 1 N N R 16.822 22.540 5.186  1.287  1.971  -0.460 CBD 48C 11 
48C OBG O4  O 0 1 N N N 16.828 23.088 3.837  1.933  3.064  0.196  OBG 48C 12 
48C CBC C7  C 0 1 N N S 16.160 21.206 5.234  -0.201 2.298  -0.718 CBC 48C 13 
48C OBH O5  O 0 1 N N N 16.467 20.461 4.075  -0.519 3.602  -0.228 OBH 48C 14 
48C CBF C8  C 0 1 N N R 14.673 21.509 5.288  -0.966 1.217  0.082  CBF 48C 15 
48C CAA C9  C 0 1 N N N 13.806 20.251 5.724  -2.216 0.775  -0.681 CAA 48C 16 
48C NAB N3  N 0 1 N N N 14.514 19.352 6.670  -2.988 -0.158 0.144  NAB 48C 17 
48C C   C10 C 0 1 N N N 14.919 18.027 6.699  -4.137 -0.682 -0.327 C   48C 18 
48C O   O6  O 0 1 N N N 15.526 17.624 7.695  -4.532 -0.382 -1.434 O   48C 19 
48C CA  C11 C 0 1 N N R 14.646 16.904 5.645  -4.931 -1.642 0.521  CA  48C 20 
48C N   N4  N 0 1 N N N 14.827 17.312 4.253  -6.131 -2.067 -0.212 N   48C 21 
48C CB  C12 C 0 1 N N N 13.286 16.198 5.914  -5.345 -0.950 1.822  CB  48C 22 
48C H1  H1  H 0 1 N N N 18.927 24.701 9.215  4.981  -1.474 1.418  H1  48C 23 
48C H2  H2  H 0 1 N N N 15.820 22.281 10.739 3.395  -2.109 -2.387 H2  48C 24 
48C H3  H3  H 0 1 N N N 14.888 22.180 8.439  1.590  -0.564 -1.832 H3  48C 25 
48C H4  H4  H 0 1 N N N 15.884 24.379 5.751  1.316  1.036  1.508  H4  48C 26 
48C H5  H5  H 0 1 N N N 17.841 22.483 5.597  1.793  1.733  -1.395 H5  48C 27 
48C H6  H6  H 0 1 N N N 17.256 23.936 3.841  1.934  3.885  -0.315 H6  48C 28 
48C H7  H7  H 0 1 N N N 16.461 20.668 6.145  -0.430 2.221  -1.781 H7  48C 29 
48C H8  H8  H 0 1 N N N 16.039 19.614 4.120  -0.022 4.314  -0.653 H8  48C 30 
48C H9  H9  H 0 1 N N N 14.369 21.728 4.254  -1.238 1.595  1.067  H9  48C 31 
48C H10 H10 H 0 1 N N N 12.885 20.611 6.207  -2.828 1.647  -0.913 H10 48C 32 
48C H11 H11 H 0 1 N N N 13.547 19.676 4.823  -1.921 0.282  -1.608 H11 48C 33 
48C H12 H12 H 0 1 N N N 14.766 19.831 7.511  -2.672 -0.399 1.028  H12 48C 34 
48C H13 H13 H 0 1 N N N 15.411 16.138 5.840  -4.319 -2.514 0.753  H13 48C 35 
48C H14 H14 H 0 1 N N N 15.716 17.757 4.149  -6.680 -2.711 0.337  H14 48C 36 
48C H15 H15 H 0 1 N N N 14.786 16.507 3.662  -6.683 -1.270 -0.494 H15 48C 37 
48C H17 H17 H 0 1 N N N 13.220 15.921 6.976  -4.455 -0.636 2.366  H17 48C 38 
48C H18 H18 H 0 1 N N N 12.462 16.882 5.662  -5.957 -0.079 1.590  H18 48C 39 
48C H19 H19 H 0 1 N N N 13.214 15.292 5.294  -5.919 -1.645 2.435  H19 48C 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
48C OBG CBD SING N N 1  
48C OBH CBC SING N N 2  
48C N   CA  SING N N 3  
48C CBD CBC SING N N 4  
48C CBD CBB SING N N 5  
48C CBC CBF SING N N 6  
48C CBF CAA SING N N 7  
48C CBF OBE SING N N 8  
48C CA  CB  SING N N 9  
48C CA  C   SING N N 10 
48C CAA NAB SING N N 11 
48C OBE CBB SING N N 12 
48C CBB NAW SING N N 13 
48C NAB C   SING N N 14 
48C C   O   DOUB N N 15 
48C OAZ CAU DOUB N N 16 
48C NAW CAU SING N N 17 
48C NAW CAY SING N N 18 
48C CAU NAT SING N N 19 
48C CAY CAX DOUB N N 20 
48C NAT CAV SING N N 21 
48C CAX CAV SING N N 22 
48C CAV OBA DOUB N N 23 
48C NAT H1  SING N N 24 
48C CAX H2  SING N N 25 
48C CAY H3  SING N N 26 
48C CBB H4  SING N N 27 
48C CBD H5  SING N N 28 
48C OBG H6  SING N N 29 
48C CBC H7  SING N N 30 
48C OBH H8  SING N N 31 
48C CBF H9  SING N N 32 
48C CAA H10 SING N N 33 
48C CAA H11 SING N N 34 
48C NAB H12 SING N N 35 
48C CA  H13 SING N N 36 
48C N   H14 SING N N 37 
48C N   H15 SING N N 38 
48C CB  H17 SING N N 39 
48C CB  H18 SING N N 40 
48C CB  H19 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
48C SMILES           ACDLabs              12.01 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CNC(=O)C(N)C"                                                                                                                        
48C InChI            InChI                1.03  "InChI=1S/C12H18N4O6/c1-5(13)10(20)14-4-6-8(18)9(19)11(22-6)16-3-2-7(17)15-12(16)21/h2-3,5-6,8-9,11,18-19H,4,13H2,1H3,(H,14,20)(H,15,17,21)/t5-,6-,8-,9-,11-/m1/s1" 
48C InChIKey         InChI                1.03  DKBBANYKDGGYBY-LODYRLCVSA-N                                                                                                                                         
48C SMILES_CANONICAL CACTVS               3.385 "C[C@@H](N)C(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O"                                                                                                    
48C SMILES           CACTVS               3.385 "C[CH](N)C(=O)NC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O"                                                                                                           
48C SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H](C(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)O)O)N"                                                                                                  
48C SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C(=O)NCC1C(C(C(O1)N2C=CC(=O)NC2=O)O)O)N"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
48C "SYSTEMATIC NAME" ACDLabs              12.01 "5'-(D-alanylamino)-5'-deoxyuridine"                                                                                       
48C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-2-azanyl-N-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
48C "Create component" 2015-02-12 EBI  
48C "Initial release"  2015-09-16 RCSB 
# 
