data_WAB
# 
_chem_comp.id                                    WAB 
_chem_comp.name                                  "(3S,4S)-8-{6-[(2-amino-3-chloropyridin-4-yl)sulfanyl]pyrido[2,3-b]pyrazin-2-yl}-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 Cl N7 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-28 
_chem_comp.pdbx_modified_date                    2023-12-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        457.980 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WAB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U7X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WAB C18 C1  C  0 1 N N N N N N 14.759 -24.451 22.705 -7.169 0.141  -0.939 C18 WAB 1  
WAB C14 C2  C  0 1 N N N N N N 15.852 -23.126 24.570 -5.113 1.572  -0.680 C14 WAB 2  
WAB C13 C3  C  0 1 N N N N N N 17.112 -22.687 23.792 -3.634 1.566  -0.281 C13 WAB 3  
WAB C17 C4  C  0 1 N N N N N N 17.747 -24.945 23.296 -3.411 -0.773 -0.878 C17 WAB 4  
WAB C16 C5  C  0 1 N N N N N N 16.569 -25.532 24.105 -4.882 -0.851 -1.298 C16 WAB 5  
WAB C15 C6  C  0 1 N N N N N N 15.392 -24.528 24.111 -5.688 0.173  -0.511 C15 WAB 6  
WAB N3  N1  N  0 1 Y N N N N N 21.665 -23.677 28.112 2.443  0.804  -0.267 N3  WAB 7  
WAB C8  C7  C  0 1 Y N N N N N 20.123 -24.631 25.069 -0.673 -0.197 -1.567 C8  WAB 8  
WAB C5  C8  C  0 1 Y N N N N N 19.763 -22.712 26.972 0.249  1.600  0.213  C5  WAB 9  
WAB C6  C9  C  0 1 Y N N N N N 19.629 -21.750 27.985 0.786  2.524  1.135  C6  WAB 10 
WAB C1  C10 C  0 1 Y N N N N N 20.529 -21.769 29.061 2.136  2.547  1.315  C1  WAB 11 
WAB C4  C11 C  0 1 Y N N N N N 20.794 -23.661 27.070 1.125  0.736  -0.486 C4  WAB 12 
WAB C20 C12 C  0 1 N N S N N N 12.991 -24.811 24.206 -7.117 -0.916 1.124  C20 WAB 13 
WAB C21 C13 C  0 1 N N S N N N 14.272 -25.026 25.034 -5.752 -0.213 0.979  C21 WAB 14 
WAB C2  C14 C  0 1 Y N N N N N 21.535 -22.744 29.092 2.952  1.664  0.591  C2  WAB 15 
WAB C23 C15 C  0 1 N N N N N N 11.964 -25.939 24.457 -6.917 -2.337 1.656  C23 WAB 16 
WAB C24 C16 C  0 1 Y N N N N N 24.235 -23.103 29.640 5.263  0.334  -0.112 C24 WAB 17 
WAB C25 C17 C  0 1 Y N N N N N 24.511 -22.575 28.369 5.881  0.526  -1.350 C25 WAB 18 
WAB C26 C18 C  0 1 Y N N N N N 25.748 -22.864 27.772 6.317  -0.569 -2.062 C26 WAB 19 
WAB C28 C19 C  0 1 Y N N N N N 26.417 -24.141 29.619 5.573  -2.021 -0.423 C28 WAB 20 
WAB C29 C20 C  0 1 Y N N N N N 25.200 -23.897 30.276 5.112  -0.968 0.356  C29 WAB 21 
WAB C9  C21 C  0 1 Y N N N N N 19.093 -23.684 24.967 -1.543 0.660  -0.874 C9  WAB 22 
WAB N10 N2  N  0 1 Y N N N N N 18.909 -22.728 25.915 -1.068 1.534  -0.006 N10 WAB 23 
WAB N12 N3  N  0 1 N N N N N N 18.202 -23.678 23.897 -2.910 0.589  -1.104 N12 WAB 24 
WAB N22 N4  N  0 1 N N N N N N 14.489 -26.407 25.665 -4.659 -1.135 1.319  N22 WAB 25 
WAB N27 N5  N  0 1 Y N N N N N 26.687 -23.633 28.387 6.158  -1.793 -1.590 N27 WAB 26 
WAB N30 N6  N  0 1 N N N N N N 27.419 -24.922 30.198 5.430  -3.328 0.031  N30 WAB 27 
WAB N7  N7  N  0 1 Y N N N N N 20.980 -24.619 26.122 0.623  -0.144 -1.362 N7  WAB 28 
WAB O19 O1  O  0 1 N N N N N N 13.427 -24.951 22.853 -7.714 -0.964 -0.183 O19 WAB 29 
WAB S11 S1  S  0 1 N N N N N N 22.685 -22.780 30.443 4.696  1.707  0.836  S11 WAB 30 
WAB CL1 CL1 CL 0 0 N N N N N N 24.891 -24.566 31.850 4.359  -1.271 1.891  CL1 WAB 31 
WAB H1  H1  H  0 1 N N N N N N 15.325 -25.072 21.995 -7.667 1.073  -0.671 H1  WAB 32 
WAB H2  H2  H  0 1 N N N N N N 14.741 -23.410 22.349 -7.255 -0.047 -2.010 H2  WAB 33 
WAB H3  H3  H  0 1 N N N N N N 16.083 -23.155 25.645 -5.659 2.268  -0.043 H3  WAB 34 
WAB H4  H4  H  0 1 N N N N N N 15.044 -22.402 24.388 -5.208 1.881  -1.721 H4  WAB 35 
WAB H5  H5  H  0 1 N N N N N N 17.464 -21.728 24.199 -3.211 2.559  -0.440 H5  WAB 36 
WAB H6  H6  H  0 1 N N N N N N 16.848 -22.561 22.732 -3.542 1.296  0.771  H6  WAB 37 
WAB H7  H7  H  0 1 N N N N N N 17.420 -24.759 22.262 -3.321 -1.023 0.179  H7  WAB 38 
WAB H8  H8  H  0 1 N N N N N N 18.579 -25.664 23.293 -2.826 -1.478 -1.469 H8  WAB 39 
WAB H9  H9  H  0 1 N N N N N N 16.243 -26.476 23.644 -4.968 -0.639 -2.364 H9  WAB 40 
WAB H10 H10 H  0 1 N N N N N N 16.893 -25.722 25.139 -5.266 -1.850 -1.094 H10 WAB 41 
WAB H11 H11 H  0 1 N N N N N N 20.236 -25.380 24.299 -1.073 -0.907 -2.275 H11 WAB 42 
WAB H12 H12 H  0 1 N N N N N N 18.846 -21.008 27.937 0.143  3.196  1.684  H12 WAB 43 
WAB H13 H13 H  0 1 N N N N N N 20.448 -21.042 29.855 2.577  3.243  2.013  H13 WAB 44 
WAB H14 H14 H  0 1 N N N N N N 12.550 -23.825 24.411 -7.754 -0.352 1.805  H14 WAB 45 
WAB H15 H15 H  0 1 N N N N N N 14.221 -24.311 25.869 -5.711 0.677  1.606  H15 WAB 46 
WAB H16 H16 H  0 1 N N N N N N 11.595 -25.876 25.491 -6.429 -2.295 2.630  H16 WAB 47 
WAB H17 H17 H  0 1 N N N N N N 11.121 -25.829 23.759 -7.886 -2.827 1.756  H17 WAB 48 
WAB H18 H18 H  0 1 N N N N N N 12.446 -26.915 24.299 -6.294 -2.901 0.962  H18 WAB 49 
WAB H19 H19 H  0 1 N N N N N N 23.785 -21.958 27.860 6.015  1.523  -1.745 H19 WAB 50 
WAB H20 H20 H  0 1 N N N N N N 25.961 -22.463 26.792 6.795  -0.426 -3.020 H20 WAB 51 
WAB H21 H21 H  0 1 N N N N N N 13.707 -26.636 26.244 -4.694 -1.393 2.294  H21 WAB 52 
WAB H22 H22 H  0 1 N N N N N N 14.581 -27.093 24.943 -4.678 -1.952 0.728  H22 WAB 53 
WAB H24 H24 H  0 1 N N N N N N 28.201 -24.976 29.577 5.009  -3.500 0.888  H24 WAB 54 
WAB H25 H25 H  0 1 N N N N N N 27.707 -24.508 31.061 5.751  -4.067 -0.509 H25 WAB 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WAB C18 O19 SING N N 1  
WAB C18 C15 SING N N 2  
WAB O19 C20 SING N N 3  
WAB C17 N12 SING N N 4  
WAB C17 C16 SING N N 5  
WAB C13 N12 SING N N 6  
WAB C13 C14 SING N N 7  
WAB N12 C9  SING N N 8  
WAB C16 C15 SING N N 9  
WAB C15 C14 SING N N 10 
WAB C15 C21 SING N N 11 
WAB C20 C23 SING N N 12 
WAB C20 C21 SING N N 13 
WAB C9  C8  DOUB Y N 14 
WAB C9  N10 SING Y N 15 
WAB C21 N22 SING N N 16 
WAB C8  N7  SING Y N 17 
WAB N10 C5  DOUB Y N 18 
WAB N7  C4  DOUB Y N 19 
WAB C5  C4  SING Y N 20 
WAB C5  C6  SING Y N 21 
WAB C4  N3  SING Y N 22 
WAB C26 C25 DOUB Y N 23 
WAB C26 N27 SING Y N 24 
WAB C6  C1  DOUB Y N 25 
WAB N3  C2  DOUB Y N 26 
WAB C25 C24 SING Y N 27 
WAB N27 C28 DOUB Y N 28 
WAB C1  C2  SING Y N 29 
WAB C2  S11 SING N N 30 
WAB C28 N30 SING N N 31 
WAB C28 C29 SING Y N 32 
WAB C24 C29 DOUB Y N 33 
WAB C24 S11 SING N N 34 
WAB C29 CL1 SING N N 35 
WAB C18 H1  SING N N 36 
WAB C18 H2  SING N N 37 
WAB C14 H3  SING N N 38 
WAB C14 H4  SING N N 39 
WAB C13 H5  SING N N 40 
WAB C13 H6  SING N N 41 
WAB C17 H7  SING N N 42 
WAB C17 H8  SING N N 43 
WAB C16 H9  SING N N 44 
WAB C16 H10 SING N N 45 
WAB C8  H11 SING N N 46 
WAB C6  H12 SING N N 47 
WAB C1  H13 SING N N 48 
WAB C20 H14 SING N N 49 
WAB C21 H15 SING N N 50 
WAB C23 H16 SING N N 51 
WAB C23 H17 SING N N 52 
WAB C23 H18 SING N N 53 
WAB C25 H19 SING N N 54 
WAB C26 H20 SING N N 55 
WAB N22 H21 SING N N 56 
WAB N22 H22 SING N N 57 
WAB N30 H24 SING N N 58 
WAB N30 H25 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WAB SMILES           ACDLabs              12.01 "Nc1nccc(Sc2ccc3nc(cnc3n2)N2CCC3(CC2)COC(C)C3N)c1Cl"                                                                                                                                       
WAB InChI            InChI                1.06  "InChI=1S/C21H24ClN7OS/c1-12-18(23)21(11-30-12)5-8-29(9-6-21)15-10-26-20-13(27-15)2-3-16(28-20)31-14-4-7-25-19(24)17(14)22/h2-4,7,10,12,18H,5-6,8-9,11,23H2,1H3,(H2,24,25)/t12-,18+/m0/s1" 
WAB InChIKey         InChI                1.06  CNWPAKCFVFDYQN-KPZWWZAWSA-N                                                                                                                                                                
WAB SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1OCC2(CCN(CC2)c3cnc4nc(Sc5ccnc(N)c5Cl)ccc4n3)[C@@H]1N"                                                                                                                             
WAB SMILES           CACTVS               3.385 "C[CH]1OCC2(CCN(CC2)c3cnc4nc(Sc5ccnc(N)c5Cl)ccc4n3)[CH]1N"                                                                                                                                 
WAB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H](C2(CCN(CC2)c3cnc4c(n3)ccc(n4)Sc5ccnc(c5Cl)N)CO1)N"                                                                                                                           
WAB SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C2(CCN(CC2)c3cnc4c(n3)ccc(n4)Sc5ccnc(c5Cl)N)CO1)N"                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WAB "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,4S)-8-{6-[(2-amino-3-chloropyridin-4-yl)sulfanyl]pyrido[2,3-b]pyrazin-2-yl}-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine"          
WAB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},4~{S})-8-[6-(2-azanyl-3-chloranyl-pyridin-4-yl)sulfanylpyrido[2,3-b]pyrazin-2-yl]-3-methyl-2-oxa-8-azaspiro[4.5]decan-4-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WAB "Create component" 2023-09-28 RCSB 
WAB "Initial release"  2024-01-03 RCSB 
# 
