data_UPB
#

_chem_comp.id                                   UPB
_chem_comp.name                                 "3-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-[(4~{R})-3-ethyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H36 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-16
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       584.662
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UPB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7E2U
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UPB  CHA  C1   C  0  1  N  N  N   -8.439  -22.349  -20.850   2.261  -0.157  -0.595  CHA  UPB   1  
UPB  NA   N1   N  0  1  Y  N  N   -6.349  -22.206  -19.441   0.142  -1.409  -0.329  NA   UPB   2  
UPB  C1A  C2   C  0  1  Y  N  N   -7.482  -21.674  -20.260   1.515  -1.328  -0.409  C1A  UPB   3  
UPB  C2A  C3   C  0  1  Y  N  N   -7.294  -20.166  -20.251   2.032  -2.618  -0.271  C2A  UPB   4  
UPB  C3A  C4   C  0  1  Y  N  N   -6.087  -19.830  -19.481   0.966  -3.482  -0.108  C3A  UPB   5  
UPB  C4A  C5   C  0  1  Y  N  N   -5.501  -21.097  -18.979  -0.204  -2.724  -0.145  C4A  UPB   6  
UPB  CMA  C6   C  0  1  N  N  N   -5.524  -18.442  -19.210   1.052  -4.975   0.077  CMA  UPB   7  
UPB  CAA  C7   C  0  1  N  N  N   -8.208  -19.180  -20.970   3.490  -2.999  -0.297  CAA  UPB   8  
UPB  CBA  C8   C  0  1  N  N  N   -7.469  -18.699  -22.226   4.056  -2.947   1.124  CBA  UPB   9  
UPB  CGA  C9   C  0  1  N  N  N   -7.463  -19.794  -23.299   5.514  -3.328   1.098  CGA  UPB  10  
UPB  O1A  O1   O  0  1  N  N  N   -8.518  -20.437  -23.533   6.221  -3.352   2.238  O1A  UPB  11  
UPB  O2A  O2   O  0  1  N  N  N   -6.410  -20.049  -23.950   6.045  -3.612   0.051  O2A  UPB  12  
UPB  CHB  C10  C  0  1  N  N  N   -4.253  -21.216  -18.127  -1.515  -3.222  -0.010  CHB  UPB  13  
UPB  NB   N2   N  0  1  N  N  N   -4.685  -23.661  -17.557  -2.483  -1.385  -1.334  NB   UPB  14  
UPB  C1B  C11  C  0  1  N  N  N   -3.859  -22.389  -17.685  -2.581  -2.514  -0.532  C1B  UPB  15  
UPB  C2B  C12  C  0  1  N  N  N   -2.494  -22.731  -17.206  -3.940  -2.821  -0.337  C2B  UPB  16  
UPB  C3B  C13  C  0  1  N  N  N   -2.442  -24.100  -16.811  -4.682  -1.875  -1.023  C3B  UPB  17  
UPB  C4B  C14  C  0  1  N  N  N   -3.771  -24.741  -16.986  -3.720  -0.962  -1.656  C4B  UPB  18  
UPB  CMB  C15  C  0  1  N  N  N   -1.355  -21.724  -17.166  -4.487  -3.969   0.471  CMB  UPB  19  
UPB  OB   O3   O  0  1  N  N  N   -4.069  -25.867  -16.756  -3.993   0.006  -2.343  OB   UPB  20  
UPB  CAB  C16  C  0  1  N  N  N   -1.228  -24.840  -16.260  -6.150  -1.799  -1.103  CAB  UPB  21  
UPB  CBB  C17  C  0  1  N  N  N   -0.036  -24.659  -16.797  -6.728  -0.856  -1.842  CBB  UPB  22  
UPB  NC   N3   N  0  1  N  N  N   -4.982  -26.128  -20.078  -2.015   1.133   1.223  NC   UPB  23  
UPB  C1C  C18  C  0  1  N  N  N   -3.666  -26.511  -19.596  -3.147   0.642   1.748  C1C  UPB  24  
UPB  C2C  C19  C  0  1  N  N  R   -3.736  -27.921  -19.065  -4.141   1.771   1.897  C2C  UPB  25  
UPB  C3C  C20  C  0  1  N  N  N   -5.141  -28.403  -19.275  -3.410   2.993   1.375  C3C  UPB  26  
UPB  C4C  C21  C  0  1  N  N  N   -5.927  -27.212  -19.896  -2.085   2.493   0.975  C4C  UPB  27  
UPB  CMC  C22  C  0  1  N  N  N   -2.746  -28.791  -19.859  -5.391   1.495   1.058  CMC  UPB  28  
UPB  OC   O4   O  0  1  N  N  N   -2.701  -25.820  -19.627  -3.341  -0.515   2.055  OC   UPB  29  
UPB  CAC  C23  C  0  1  N  N  N   -5.514  -29.671  -19.136  -3.866   4.242   1.295  CAC  UPB  30  
UPB  CBC  C24  C  0  1  N  N  N   -6.974  -30.112  -19.122  -2.985   5.332   0.743  CBC  UPB  31  
UPB  CHD  C25  C  0  1  N  N  N   -7.188  -27.208  -20.265  -1.085   3.249   0.446  CHD  UPB  32  
UPB  ND   N4   N  0  1  N  N  N   -7.533  -24.811  -20.378   0.405   1.310   0.009  ND   UPB  33  
UPB  C1D  C26  C  0  1  N  N  N   -8.018  -26.030  -20.776   0.162   2.616   0.018  C1D  UPB  34  
UPB  C2D  C27  C  0  1  N  N  N   -9.145  -25.819  -21.511   1.313   3.294  -0.456  C2D  UPB  35  
UPB  C3D  C28  C  0  1  N  N  N   -9.377  -24.507  -21.584   2.241   2.347  -0.745  C3D  UPB  36  
UPB  C4D  C29  C  0  1  N  N  N   -8.384  -23.868  -20.893   1.652   1.091  -0.445  C4D  UPB  37  
UPB  CMD  C30  C  0  1  N  N  N  -10.046  -26.860  -22.178   1.475   4.785  -0.611  CMD  UPB  38  
UPB  CAD  C31  C  0  1  N  N  N  -10.593  -24.012  -22.370   3.630   2.583  -1.282  CAD  UPB  39  
UPB  CBD  C32  C  0  1  N  N  N  -10.212  -23.835  -23.835   4.625   2.624  -0.120  CBD  UPB  40  
UPB  CGD  C33  C  0  1  N  N  N  -11.430  -23.379  -24.633   6.013   2.860  -0.656  CGD  UPB  41  
UPB  O1D  O5   O  0  1  N  N  N  -12.599  -23.566  -24.190   7.055   2.934   0.187  O1D  UPB  42  
UPB  O2D  O6   O  0  1  N  N  N  -11.252  -22.811  -25.741   6.189   2.984  -1.845  O2D  UPB  43  
UPB  H1   H1   H  0  1  N  N  N   -9.267  -21.826  -21.306   3.309  -0.219  -0.851  H1   UPB  44  
UPB  H3   H3   H  0  1  N  N  N   -6.192  -23.172  -19.238  -0.475  -0.663  -0.389  H3   UPB  45  
UPB  H4   H4   H  0  1  N  N  N   -5.964  -18.041  -18.285   1.124  -5.206   1.140  H4   UPB  46  
UPB  H5   H5   H  0  1  N  N  N   -4.431  -18.505  -19.099   0.160  -5.445  -0.337  H5   UPB  47  
UPB  H6   H6   H  0  1  N  N  N   -5.769  -17.776  -20.051   1.935  -5.354  -0.438  H6   UPB  48  
UPB  H7   H7   H  0  1  N  N  N   -8.429  -18.325  -20.314   3.595  -4.009  -0.693  H7   UPB  49  
UPB  H8   H8   H  0  1  N  N  N   -9.147  -19.677  -21.254   4.037  -2.301  -0.932  H8   UPB  50  
UPB  H9   H9   H  0  1  N  N  N   -6.432  -18.446  -21.961   3.951  -1.937   1.520  H9   UPB  51  
UPB  H10  H10  H  0  1  N  N  N   -7.974  -17.806  -22.623   3.509  -3.644   1.758  H10  UPB  52  
UPB  H11  H11  H  0  1  N  N  N   -8.356  -21.072  -24.221   7.153  -3.602   2.172  H11  UPB  53  
UPB  H12  H12  H  0  1  N  N  N   -3.684  -20.331  -17.882  -1.688  -4.158   0.501  H12  UPB  54  
UPB  H14  H14  H  0  1  N  N  N   -0.449  -22.210  -16.776  -4.634  -3.650   1.503  H14  UPB  55  
UPB  H15  H15  H  0  1  N  N  N   -1.161  -21.349  -18.182  -5.441  -4.287   0.050  H15  UPB  56  
UPB  H16  H16  H  0  1  N  N  N   -1.631  -20.884  -16.512  -3.783  -4.800   0.444  H16  UPB  57  
UPB  H17  H17  H  0  1  N  N  N   -1.344  -25.516  -15.426  -6.758  -2.509  -0.562  H17  UPB  58  
UPB  H18  H18  H  0  1  N  N  N    0.820  -25.186  -16.402  -7.802  -0.742  -1.828  H18  UPB  59  
UPB  H19  H19  H  0  1  N  N  N    0.084  -23.984  -17.631  -6.123  -0.204  -2.454  H19  UPB  60  
UPB  H20  H20  H  0  1  N  N  N   -5.205  -25.240  -20.480  -1.230   0.593   1.039  H20  UPB  61  
UPB  H21  H21  H  0  1  N  N  N   -3.478  -27.940  -17.996  -4.409   1.907   2.944  H21  UPB  62  
UPB  H23  H23  H  0  1  N  N  N   -2.784  -29.825  -19.485  -5.903   0.615   1.448  H23  UPB  63  
UPB  H24  H24  H  0  1  N  N  N   -3.019  -28.777  -20.925  -6.059   2.355   1.107  H24  UPB  64  
UPB  H25  H25  H  0  1  N  N  N   -1.728  -28.393  -19.736  -5.102   1.319   0.022  H25  UPB  65  
UPB  H26  H26  H  0  1  N  N  N   -4.748  -30.424  -19.028  -4.868   4.473   1.626  H26  UPB  66  
UPB  H28  H28  H  0  1  N  N  N   -7.027  -31.203  -18.995  -3.526   6.279   0.756  H28  UPB  67  
UPB  H29  H29  H  0  1  N  N  N   -7.497  -29.621  -18.289  -2.087   5.419   1.355  H29  UPB  68  
UPB  H30  H30  H  0  1  N  N  N   -7.451  -29.830  -20.072  -2.704   5.089  -0.282  H30  UPB  69  
UPB  H31  H31  H  0  1  N  N  N   -7.703  -28.155  -20.199  -1.213   4.316   0.342  H31  UPB  70  
UPB  H33  H33  H  0  1  N  N  N   -9.653  -27.868  -21.978   0.558   5.284  -0.298  H33  UPB  71  
UPB  H34  H34  H  0  1  N  N  N  -11.065  -26.777  -21.772   2.305   5.126   0.008  H34  UPB  72  
UPB  H35  H35  H  0  1  N  N  N  -10.068  -26.684  -23.264   1.679   5.021  -1.655  H35  UPB  73  
UPB  H36  H36  H  0  1  N  N  N  -10.928  -23.048  -21.959   3.898   1.776  -1.962  H36  UPB  74  
UPB  H37  H37  H  0  1  N  N  N  -11.407  -24.748  -22.289   3.656   3.533  -1.816  H37  UPB  75  
UPB  H38  H38  H  0  1  N  N  N   -9.850  -24.793  -24.237   4.356   3.432   0.561  H38  UPB  76  
UPB  H39  H39  H  0  1  N  N  N   -9.417  -23.079  -23.917   4.598   1.674   0.414  H39  UPB  77  
UPB  H40  H40  H  0  1  N  N  N  -13.232  -23.222  -24.809   7.926   3.087  -0.204  H40  UPB  78  
UPB  H2   H2   H  0  1  N  N  N   -5.649  -23.769  -17.802  -1.654  -0.965  -1.614  H2   UPB  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UPB  O2D  CGD  DOUB  N  N   1  
UPB  CGD  O1D  SING  N  N   2  
UPB  CGD  CBD  SING  N  N   3  
UPB  O2A  CGA  DOUB  N  N   4  
UPB  CBD  CAD  SING  N  N   5  
UPB  O1A  CGA  SING  N  N   6  
UPB  CGA  CBA  SING  N  N   7  
UPB  CAD  C3D  SING  N  N   8  
UPB  CBA  CAA  SING  N  N   9  
UPB  CMD  C2D  SING  N  N  10  
UPB  C3D  C2D  DOUB  N  N  11  
UPB  C3D  C4D  SING  N  N  12  
UPB  C2D  C1D  SING  N  N  13  
UPB  CAA  C2A  SING  N  N  14  
UPB  C4D  CHA  DOUB  N  Z  15  
UPB  C4D  ND   SING  N  N  16  
UPB  CHA  C1A  SING  N  N  17  
UPB  C1D  ND   DOUB  N  N  18  
UPB  C1D  CHD  SING  N  N  19  
UPB  CHD  C4C  DOUB  N  Z  20  
UPB  C1A  C2A  DOUB  Y  N  21  
UPB  C1A  NA   SING  Y  N  22  
UPB  C2A  C3A  SING  Y  N  23  
UPB  NC   C4C  SING  N  N  24  
UPB  NC   C1C  SING  N  N  25  
UPB  C4C  C3C  SING  N  N  26  
UPB  CMC  C2C  SING  N  N  27  
UPB  OC   C1C  DOUB  N  N  28  
UPB  C1C  C2C  SING  N  N  29  
UPB  C3A  CMA  SING  N  N  30  
UPB  C3A  C4A  DOUB  Y  N  31  
UPB  NA   C4A  SING  Y  N  32  
UPB  C3C  CAC  DOUB  N  Z  33  
UPB  C3C  C2C  SING  N  N  34  
UPB  CAC  CBC  SING  N  N  35  
UPB  C4A  CHB  SING  N  N  36  
UPB  CHB  C1B  DOUB  N  Z  37  
UPB  C1B  NB   SING  N  N  38  
UPB  C1B  C2B  SING  N  N  39  
UPB  NB   C4B  SING  N  N  40  
UPB  C2B  CMB  SING  N  N  41  
UPB  C2B  C3B  DOUB  N  N  42  
UPB  C4B  C3B  SING  N  N  43  
UPB  C4B  OB   DOUB  N  N  44  
UPB  C3B  CAB  SING  N  N  45  
UPB  CBB  CAB  DOUB  N  N  46  
UPB  CHA  H1   SING  N  N  47  
UPB  NA   H3   SING  N  N  48  
UPB  CMA  H4   SING  N  N  49  
UPB  CMA  H5   SING  N  N  50  
UPB  CMA  H6   SING  N  N  51  
UPB  CAA  H7   SING  N  N  52  
UPB  CAA  H8   SING  N  N  53  
UPB  CBA  H9   SING  N  N  54  
UPB  CBA  H10  SING  N  N  55  
UPB  O1A  H11  SING  N  N  56  
UPB  CHB  H12  SING  N  N  57  
UPB  CMB  H14  SING  N  N  58  
UPB  CMB  H15  SING  N  N  59  
UPB  CMB  H16  SING  N  N  60  
UPB  CAB  H17  SING  N  N  61  
UPB  CBB  H18  SING  N  N  62  
UPB  CBB  H19  SING  N  N  63  
UPB  NC   H20  SING  N  N  64  
UPB  C2C  H21  SING  N  N  65  
UPB  CMC  H23  SING  N  N  66  
UPB  CMC  H24  SING  N  N  67  
UPB  CMC  H25  SING  N  N  68  
UPB  CAC  H26  SING  N  N  69  
UPB  CBC  H28  SING  N  N  70  
UPB  CBC  H29  SING  N  N  71  
UPB  CBC  H30  SING  N  N  72  
UPB  CHD  H31  SING  N  N  73  
UPB  CMD  H33  SING  N  N  74  
UPB  CMD  H34  SING  N  N  75  
UPB  CMD  H35  SING  N  N  76  
UPB  CAD  H36  SING  N  N  77  
UPB  CAD  H37  SING  N  N  78  
UPB  CBD  H38  SING  N  N  79  
UPB  CBD  H39  SING  N  N  80  
UPB  O1D  H40  SING  N  N  81  
UPB  NB   H2   SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UPB  InChI             InChI                 1.03   "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,19,34H,2,9-12H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b20-7-,26-13-,27-14-,29-15-/t19-/m1/s1"  
UPB  InChIKey          InChI                 1.03   SNHIGJASYQUMKZ-NSNBCYBJSA-N  
UPB  SMILES_CANONICAL  CACTVS                3.385  "C\C=C/1[C@@H](C)C(=O)NC/1=C/C2=N\C(=C/c3[nH]c(\C=C4/NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O"  
UPB  SMILES            CACTVS                3.385  "CC=C1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O"  
UPB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C/C=C\1/[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C"  
UPB  SMILES            "OpenEye OEToolkits"  2.0.7  "CC=C1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)C(=C2C)CCC(=O)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          UPB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[(~{Z})-[5-[(~{Z})-[(3~{Z},4~{R})-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UPB  "Create component"  2021-03-16  PDBJ  
UPB  "Initial release"   2021-08-25  RCSB  
##
