data_SDB
#

_chem_comp.id                                   SDB
_chem_comp.name                                 "(4S)-2-[(1S)-1-amino-2-hydroxyethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H13 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              SER
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-12-20
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       187.196
_chem_comp.one_letter_code                      S
_chem_comp.three_letter_code                    SDB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2W76
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SDB  O     O     O  0  1  N  N  N  -66.901  -41.099  18.876  -2.483  -1.686  -0.585  O     SDB   1  
SDB  C     C     C  0  1  N  N  N  -66.745  -40.816  17.684  -2.633  -0.777   0.196  C     SDB   2  
SDB  CA1   CA1   C  0  1  N  N  S  -66.941  -39.290  17.375  -1.515   0.206   0.432  CA1   SDB   3  
SDB  CB1   CB1   C  0  1  N  N  N  -66.056  -38.300  18.133  -1.769   1.490  -0.372  CB1   SDB   4  
SDB  CG    CG    C  0  1  N  N  N  -66.428  -36.886  17.689  -0.598   2.446  -0.137  CG    SDB   5  
SDB  NE    NE    N  0  1  N  N  N  -67.828  -36.767  18.086   0.673   1.757  -0.327  NE    SDB   6  
SDB  N1    N1    N  0  1  N  N  N  -68.338  -38.819  17.370  -0.242  -0.362  -0.041  N1    SDB   7  
SDB  C1    C1    C  0  1  N  N  N  -68.681  -37.706  18.055   0.810   0.483  -0.274  C1    SDB   8  
SDB  CA    CA    C  0  1  N  N  S  -70.057  -37.631  18.744   2.182  -0.106  -0.475  CA    SDB   9  
SDB  N     N     N  0  1  N  N  N  -70.575  -36.452  19.498   2.056  -1.486  -0.964  N     SDB  10  
SDB  CB    CB    C  0  1  N  N  N  -70.162  -38.742  19.787   2.938  -0.105   0.855  CB    SDB  11  
SDB  OG    OG    O  0  1  N  N  N  -71.525  -39.233  19.696   4.278  -0.555   0.642  OG    SDB  12  
SDB  OXT   OXT   O  0  1  N  Y  N  -66.000  -41.821  17.326  -3.797  -0.638   0.850  OXT   SDB  13  
SDB  HA1   HA1   H  0  1  N  N  N  -66.574  -39.282  16.338  -1.445   0.441   1.494  HA1   SDB  14  
SDB  HOT   HOT   H  0  1  N  N  N  -65.849  -42.387  18.074  -4.485  -1.291   0.664  HOT   SDB  15  
SDB  HB11  HB11  H  0  0  N  N  N  -66.218  -38.407  19.216  -1.841   1.251  -1.433  HB11  SDB  16  
SDB  HB12  HB12  H  0  0  N  N  N  -64.996  -38.498  17.917  -2.696   1.955  -0.037  HB12  SDB  17  
SDB  H1    H1    H  0  1  N  N  N  -69.033  -39.324  16.859  -0.150  -1.317  -0.184  H1    SDB  18  
SDB  HG1C  HG1C  H  0  0  N  N  N  -65.801  -36.129  18.183  -0.665   3.277  -0.840  HG1C  SDB  19  
SDB  HG2C  HG2C  H  0  0  N  N  N  -66.273  -36.721  16.613  -0.648   2.833   0.881  HG2C  SDB  20  
SDB  HA    HA    H  0  1  N  N  N  -70.653  -37.649  17.819   2.730   0.489  -1.205  HA    SDB  21  
SDB  HN1   HN1   H  0  1  N  N  N  -70.691  -36.696  20.461   1.551  -2.058  -0.305  HN1   SDB  22  
SDB  HN2   HN2   H  0  1  N  N  N  -69.925  -35.696  19.422   1.617  -1.508  -1.873  HN2   SDB  23  
SDB  HB1C  HB1C  H  0  0  N  N  N  -69.442  -39.546  19.575   2.955   0.907   1.262  HB1C  SDB  24  
SDB  HB2C  HB2C  H  0  0  N  N  N  -69.930  -38.374  20.797   2.438  -0.771   1.558  HB2C  SDB  25  
SDB  HG    HG    H  0  1  N  N  N  -71.882  -39.340  20.570   4.817  -0.579   1.445  HG    SDB  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SDB  O    C     DOUB  N  N   1  
SDB  C    CA1   SING  N  N   2  
SDB  C    OXT   SING  N  N   3  
SDB  CA1  CB1   SING  N  N   4  
SDB  CA1  N1    SING  N  N   5  
SDB  CB1  CG    SING  N  N   6  
SDB  CG   NE    SING  N  N   7  
SDB  NE   C1    DOUB  N  N   8  
SDB  N1   C1    SING  N  N   9  
SDB  C1   CA    SING  N  N  10  
SDB  CA   N     SING  N  N  11  
SDB  CA   CB    SING  N  N  12  
SDB  CB   OG    SING  N  N  13  
SDB  CA1  HA1   SING  N  N  14  
SDB  OXT  HOT   SING  N  N  15  
SDB  CB1  HB11  SING  N  N  16  
SDB  CB1  HB12  SING  N  N  17  
SDB  N1   H1    SING  N  N  18  
SDB  CG   HG1C  SING  N  N  19  
SDB  CG   HG2C  SING  N  N  20  
SDB  CA   HA    SING  N  N  21  
SDB  N    HN1   SING  N  N  22  
SDB  N    HN2   SING  N  N  23  
SDB  CB   HB1C  SING  N  N  24  
SDB  CB   HB2C  SING  N  N  25  
SDB  OG   HG    SING  N  N  26  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SDB  SMILES            ACDLabs               10.04  "O=C(O)C1NC(=NCC1)C(N)CO"  
SDB  SMILES_CANONICAL  CACTVS                3.352  "N[C@H](CO)C1=NCC[C@H](N1)C(O)=O"  
SDB  SMILES            CACTVS                3.352  "N[CH](CO)C1=NCC[CH](N1)C(O)=O"  
SDB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "C1CN=C(N[C@@H]1C(=O)O)[C@@H](CO)N"  
SDB  SMILES            "OpenEye OEToolkits"  1.6.1  "C1CN=C(NC1C(=O)O)C(CO)N"  
SDB  InChI             InChI                 1.03   "InChI=1S/C7H13N3O3/c8-4(3-11)6-9-2-1-5(10-6)7(12)13/h4-5,11H,1-3,8H2,(H,9,10)(H,12,13)/t4-,5+/m1/s1"  
SDB  InChIKey          InChI                 1.03   VUUJBNDKGSHBPM-UHNVWZDZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SDB  "SYSTEMATIC NAME"  ACDLabs               10.04  "(4S)-2-[(1S)-1-amino-2-hydroxyethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid"  
SDB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(4S)-2-[(1S)-1-amino-2-hydroxy-ethyl]-3,4,5,6-tetrahydropyrimidine-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SDB  "Create component"        2008-12-20  EBI   
SDB  "Modify descriptor"       2011-06-04  RCSB  
SDB  "Modify one letter code"  2020-02-14  PDBE  
##
