data_OIB
# 
_chem_comp.id                                    OIB 
_chem_comp.name                                  "hydroxylated gamma-amino valeroyl moiety" 
_chem_comp.type                                  "L-beta-peptide, C-gamma linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H13 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid; (2S,3R,4S)-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        179.171 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OIB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AGY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OIB CA  CE  C 0 1 N N N Y N N -9.471  -1.110 -19.667 -2.257 1.210  0.510  CE  OIB 1  
OIB CG  CG  C 0 1 N N S Y N N -8.681  -2.107 -20.526 -1.291 0.225  -0.152 CG  OIB 2  
OIB CH3 CH3 C 0 1 N N N N N N -9.866  -4.100 -20.186 -2.545 -1.779 -0.547 CH3 OIB 3  
OIB CB  CB  C 0 1 N N R Y N N -7.207  -1.682 -20.653 0.145  0.573  0.246  CB  OIB 4  
OIB CE  CA  C 0 1 N N S Y N N -6.446  -2.509 -21.706 1.110  -0.412 -0.416 CA  OIB 5  
OIB C   C   C 0 1 N N N Y N Y -6.526  -4.014 -21.436 2.524  -0.069 -0.024 C   OIB 6  
OIB N   N   N 0 1 N N N Y Y N -8.702  -0.920 -18.440 -3.635 0.876  0.128  N   OIB 7  
OIB OG  OG  O 0 1 N N N N N N -8.724  -3.362 -19.874 -1.596 -1.103 0.280  OG  OIB 8  
OIB OB  OB  O 0 1 N N N N N N -7.100  -0.312 -21.010 0.449  1.901  -0.185 OB  OIB 9  
OIB OA  OA  O 0 1 N N N N N N -7.022  -2.307 -22.969 0.805  -1.740 0.015  OA  OIB 10 
OIB O   O   O 0 1 N N N Y N Y -7.199  -4.729 -22.112 3.171  -0.842 0.641  O   OIB 11 
OIB HA1 HE1 H 0 1 N N N Y N N -9.581  -0.153 -20.199 -2.154 1.147  1.593  HE1 OIB 12 
OIB HA2 HE2 H 0 1 N N N Y N N -10.466 -1.515 -19.433 -2.024 2.223  0.181  HE2 OIB 13 
OIB HG  HG  H 0 1 N N N Y N N -9.132  -2.164 -21.528 -1.394 0.288  -1.235 HG  OIB 14 
OIB HB  HB  H 0 1 N N N Y N N -6.722  -1.846 -19.679 0.247  0.510  1.329  HB  OIB 15 
OIB OXT OXT O 0 1 N Y N Y N Y -5.986  -4.417 -20.654 3.065  1.095  -0.416 OXT OIB 16 
OIB H2  H   H 0 1 N Y N Y Y N -9.179  -0.274 -17.844 -4.293 1.513  0.553  H   OIB 17 
OIB HOB HB2 H 0 1 N N N N N N -7.563  0.219  -20.373 0.379  2.030  -1.141 HB2 OIB 18 
OIB HOE HA2 H 0 1 N N N N N N -7.383  -3.126 -23.287 0.876  -1.869 0.971  HA2 OIB 19 
OIB HXT HXT H 0 1 N Y N Y N Y -6.136  -5.354 -20.614 3.976  1.271  -0.140 HXT OIB 20 
OIB HE1 HA1 H 0 1 N N N Y N N -5.390  -2.201 -21.705 1.008  -0.349 -1.499 HA1 OIB 21 
OIB H   H1  H 0 1 N N N Y Y N -8.603  -1.797 -17.970 -3.740 0.864  -0.875 H1  OIB 22 
OIB H5  H2  H 0 1 N N N N N N -9.840  -5.060 -19.650 -2.156 -1.852 -1.563 H2  OIB 23 
OIB H3  H3  H 0 1 N N N N N N -10.761 -3.536 -19.884 -2.723 -2.780 -0.154 H3  OIB 24 
OIB H4  H4  H 0 1 N N N N N N -9.898  -4.285 -21.270 -3.482 -1.221 -0.557 H4  OIB 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OIB OA  CE  SING N N 1  
OIB O   C   DOUB N N 2  
OIB CE  C   SING N N 3  
OIB CE  CB  SING N N 4  
OIB OB  CB  SING N N 5  
OIB CB  CG  SING N N 6  
OIB CG  OG  SING N N 7  
OIB CG  CA  SING N N 8  
OIB CH3 OG  SING N N 9  
OIB CA  N   SING N N 10 
OIB CA  HA1 SING N N 11 
OIB CA  HA2 SING N N 12 
OIB CG  HG  SING N N 13 
OIB CB  HB  SING N N 14 
OIB C   OXT SING N N 15 
OIB N   H2  SING N N 16 
OIB OB  HOB SING N N 17 
OIB OA  HOE SING N N 18 
OIB OXT HXT SING N N 19 
OIB CE  HE1 SING N N 20 
OIB N   H   SING N N 21 
OIB CH3 H5  SING N N 22 
OIB CH3 H3  SING N N 23 
OIB CH3 H4  SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OIB InChI            InChI                1.06    "InChI=1S/C6H13NO5/c1-12-3(2-7)4(8)5(9)6(10)11/h3-5,8-9H,2,7H2,1H3,(H,10,11)/t3-,4-,5-/m0/s1" 
OIB InChIKey         InChI                1.06    AZZQNKGHODDJIM-YUPRTTJUSA-N                                                                   
OIB SMILES_CANONICAL CACTVS               3.385   "CO[C@@H](CN)[C@H](O)[C@H](O)C(O)=O"                                                          
OIB SMILES           CACTVS               3.385   "CO[CH](CN)[CH](O)[CH](O)C(O)=O"                                                              
OIB SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CO[C@@H](CN)[C@@H]([C@@H](C(=O)O)O)O"                                                        
OIB SMILES           "OpenEye OEToolkits" 3.1.0.0 "COC(CN)C(C(C(=O)O)O)O"                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           OIB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OIB "Create component"         2022-09-08 PDBE 
OIB "Modify leaving atom flag" 2022-09-08 PDBE 
OIB "Initial release"          2023-08-16 RCSB 
OIB "Modify backbone"          2023-11-03 PDBE 
OIB "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 OIB "(2~{S},3~{R},4~{S})-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid" PDB ? 
2 OIB "(2S,3R,4S)-5-azanyl-4-methoxy-2,3-bis(oxidanyl)pentanoic acid"          PDB ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OIB 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
