data_9PB
# 
_chem_comp.id                                    9PB 
_chem_comp.name                                  
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-(naphthalen-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H43 N3 O16" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-20 
_chem_comp.pdbx_modified_date                    2018-04-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        725.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9PB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O9O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9PB C4  C1  C 0 1 N N R 16.176 13.573 21.947 4.138   0.508  2.699  C4  9PB 1  
9PB C5  C2  C 0 1 N N R 15.740 12.140 22.152 2.643   0.752  2.918  C5  9PB 2  
9PB C6  C3  C 0 1 N N N 16.777 11.411 23.028 2.401   1.161  4.373  C6  9PB 3  
9PB C3  C4  C 0 1 N N S 15.157 14.273 21.106 4.379   0.158  1.227  C3  9PB 4  
9PB CBS C5  C 0 1 Y N N 3.637  7.483  16.923 -8.356  -1.649 -0.535 CBS 9PB 5  
9PB CBT C6  C 0 1 Y N N 3.215  7.989  15.694 -8.934  -1.974 0.705  CBT 9PB 6  
9PB CBY C7  C 0 1 Y N N 3.452  7.274  14.527 -10.004 -1.229 1.228  CBY 9PB 7  
9PB CBX C8  C 0 1 Y N N 3.031  7.782  13.301 -10.540 -1.573 2.432  CBX 9PB 8  
9PB CBW C9  C 0 1 Y N N 2.368  9.002  13.235 -10.042 -2.655 3.155  CBW 9PB 9  
9PB CBV C10 C 0 1 Y N N 2.126  9.720  14.399 -9.007  -3.400 2.679  CBV 9PB 10 
9PB CBU C11 C 0 1 Y N N 2.551  9.213  15.621 -8.428  -3.075 1.440  CBU 9PB 11 
9PB CBP C12 C 0 1 Y N N 2.305  9.935  16.778 -7.358  -3.820 0.916  CBP 9PB 12 
9PB CBQ C13 C 0 1 Y N N 2.728  9.434  18.004 -6.824  -3.477 -0.287 CBQ 9PB 13 
9PB CBR C14 C 0 1 Y N N 3.386  8.212  18.084 -7.321  -2.394 -1.010 CBR 9PB 14 
9PB CBN C15 C 0 1 N N N 3.794  7.758  19.337 -6.708  -2.047 -2.342 CBN 9PB 15 
9PB OBO O1  O 0 1 N N N 5.033  8.406  19.679 -5.640  -1.117 -2.147 OBO 9PB 16 
9PB CBM C16 C 0 1 N N N 5.312  8.213  21.050 -4.987  -0.720 -3.355 CBM 9PB 17 
9PB CBL C17 C 0 1 Y N N 6.528  9.032  21.476 -3.885  0.256  -3.032 CBL 9PB 18 
9PB CBH C18 C 0 1 Y N N 7.699  8.568  21.878 -3.535  0.705  -1.804 CBH 9PB 19 
9PB NBK N1  N 0 1 Y N N 6.569  10.351 21.576 -3.057  0.844  -3.903 NBK 9PB 20 
9PB NBJ N2  N 0 1 Y N N 7.688  10.669 21.962 -2.251  1.611  -3.257 NBJ 9PB 21 
9PB NBI N3  N 0 1 Y N N 8.427  9.679  22.082 -2.502  1.558  -1.996 NBI 9PB 22 
9PB CAG C19 C 0 1 N N R 9.748  9.902  22.674 -1.789  2.292  -0.947 CAG 9PB 23 
9PB CAK C20 C 0 1 N N R 10.314 11.231 22.300 -0.290  1.995  -1.045 CAK 9PB 24 
9PB OBA O2  O 0 1 N N N 10.598 11.096 20.904 -0.064  0.603  -0.820 OBA 9PB 25 
9PB OAY O3  O 0 1 N N N 9.558  9.869  24.072 -2.008  3.694  -1.115 OAY 9PB 26 
9PB CAI C21 C 0 1 N N R 10.778 10.068 24.821 -1.375  4.506  -0.124 CAI 9PB 27 
9PB CAJ C22 C 0 1 N N N 10.246 10.342 26.232 -1.699  5.978  -0.386 CAJ 9PB 28 
9PB OBB O4  O 0 1 N N N 9.435  9.272  26.649 -3.101  6.195  -0.213 OBB 9PB 29 
9PB CAH C23 C 0 1 N N R 11.359 11.375 24.448 0.141   4.298  -0.188 CAH 9PB 30 
9PB OAZ O5  O 0 1 N N N 12.590 11.510 25.177 0.772   5.065  0.840  OAZ 9PB 31 
9PB CAL C24 C 0 1 N N S 11.640 11.379 22.953 0.454   2.813  0.016  CAL 9PB 32 
9PB O1  O6  O 0 1 N N N 12.195 12.662 22.608 1.860   2.598  -0.116 O1  9PB 33 
9PB C1  C25 C 0 1 N N S 13.462 12.725 21.980 2.357   1.505  0.659  C1  9PB 34 
9PB C2  C26 C 0 1 N N R 13.791 14.203 21.778 3.840   1.291  0.349  C2  9PB 35 
9PB O2  O7  O 0 1 N N N 12.764 14.767 20.920 3.995   0.942  -1.028 O2  9PB 36 
9PB O5  O8  O 0 1 N N N 14.465 12.079 22.800 2.200   1.797  2.049  O5  9PB 37 
9PB O6  O9  O 0 1 N N N 16.858 12.072 24.278 0.996   1.276  4.608  O6  9PB 38 
9PB O4  O10 O 0 1 N N N 17.378 13.513 21.166 4.572   -0.574 3.526  O4  9PB 39 
9PB O3  O11 O 0 1 N N N 15.535 15.618 20.895 5.781   -0.000 0.997  O3  9PB 40 
9PB CAM C27 C 0 1 N N S 15.234 16.229 19.675 6.098   -0.922 -0.048 CAM 9PB 41 
9PB OBD O12 O 0 1 N N N 15.994 15.489 18.747 5.681   -2.235 0.332  OBD 9PB 42 
9PB CAO C28 C 0 1 N N R 15.803 16.001 17.406 5.929   -3.235 -0.659 CAO 9PB 43 
9PB CAP C29 C 0 1 N N N 16.554 15.035 16.450 5.418   -4.587 -0.157 CAP 9PB 44 
9PB OBG O13 O 0 1 N N N 17.951 14.942 16.797 3.997   -4.538 -0.018 OBG 9PB 45 
9PB CAN C30 C 0 1 N N S 16.264 17.469 17.371 7.434   -3.325 -0.925 CAN 9PB 46 
9PB OBE O14 O 0 1 N N N 15.972 17.990 16.072 7.680   -4.283 -1.956 OBE 9PB 47 
9PB CAR C31 C 0 1 N N S 15.463 18.298 18.362 7.948   -1.952 -1.370 CAR 9PB 48 
9PB OBC O15 O 0 1 N N N 16.040 19.593 18.443 9.365   -2.008 -1.550 OBC 9PB 49 
9PB CAQ C32 C 0 1 N N R 15.703 17.687 19.718 7.610   -0.919 -0.291 CAQ 9PB 50 
9PB OBF O16 O 0 1 N N N 15.007 18.362 20.781 8.020   0.379  -0.726 OBF 9PB 51 
9PB H1  H1  H 0 1 N N N 16.325 14.085 22.909 4.696   1.409  2.955  H1  9PB 52 
9PB H2  H2  H 0 1 N N N 15.691 11.638 21.175 2.089   -0.161 2.701  H2  9PB 53 
9PB H3  H3  H 0 1 N N N 16.465 10.367 23.180 2.820   0.406  5.037  H3  9PB 54 
9PB H4  H4  H 0 1 N N N 17.759 11.432 22.534 2.882   2.121  4.565  H4  9PB 55 
9PB H5  H5  H 0 1 N N N 15.088 13.754 20.139 3.862   -0.770 0.983  H5  9PB 56 
9PB H6  H6  H 0 1 N N N 4.153  6.536  16.975 -8.734  -0.816 -1.108 H6  9PB 57 
9PB H7  H7  H 0 1 N N N 3.963  6.324  14.571 -10.400 -0.387 0.679  H7  9PB 58 
9PB H8  H8  H 0 1 N N N 3.221  7.225  12.396 -11.362 -0.999 2.832  H8  9PB 59 
9PB H9  H9  H 0 1 N N N 2.042  9.390  12.281 -10.485 -2.907 4.107  H9  9PB 60 
9PB H10 H10 H 0 1 N N N 1.610  10.668 14.355 -8.631  -4.235 3.251  H10 9PB 61 
9PB H11 H11 H 0 1 N N N 1.788  10.882 16.728 -6.962  -4.661 1.466  H11 9PB 62 
9PB H12 H12 H 0 1 N N N 2.543  10.001 18.905 -6.002  -4.051 -0.687 H12 9PB 63 
9PB H13 H13 H 0 1 N N N 3.028  8.003  20.087 -6.320  -2.951 -2.811 H13 9PB 64 
9PB H14 H14 H 0 1 N N N 3.942  6.668  19.306 -7.465  -1.600 -2.986 H14 9PB 65 
9PB H15 H15 H 0 1 N N N 4.440  8.526  21.643 -4.564  -1.597 -3.844 H15 9PB 66 
9PB H16 H16 H 0 1 N N N 5.514  7.147  21.230 -5.709  -0.246 -4.019 H16 9PB 67 
9PB H17 H17 H 0 1 N N N 7.999  7.539  22.011 -3.988  0.437  -0.862 H17 9PB 68 
9PB H18 H18 H 0 1 N N N 10.439 9.107  22.357 -2.159  1.981  0.030  H18 9PB 69 
9PB H19 H19 H 0 1 N N N 9.631  12.062 22.532 0.071   2.269  -2.036 H19 9PB 70 
9PB H20 H20 H 0 1 N N N 10.967 11.907 20.576 -0.510  0.024  -1.453 H20 9PB 71 
9PB H21 H21 H 0 1 N N N 11.488 9.229  24.778 -1.739  4.224  0.864  H21 9PB 72 
9PB H22 H22 H 0 1 N N N 11.092 10.452 26.927 -1.146  6.603  0.315  H22 9PB 73 
9PB H23 H23 H 0 1 N N N 9.654  11.269 26.226 -1.415  6.237  -1.406 H23 9PB 74 
9PB H24 H24 H 0 1 N N N 9.107  9.445  27.524 -3.380  7.108  -0.363 H24 9PB 75 
9PB H25 H25 H 0 1 N N N 10.662 12.189 24.698 0.512   4.620  -1.161 H25 9PB 76 
9PB H26 H26 H 0 1 N N N 12.408 11.507 26.109 0.612   6.016  0.776  H26 9PB 77 
9PB H27 H27 H 0 1 N N N 12.313 10.553 22.681 0.128   2.504  1.009  H27 9PB 78 
9PB H28 H28 H 0 1 N N N 13.420 12.238 20.995 1.799   0.602  0.412  H28 9PB 79 
9PB H29 H29 H 0 1 N N N 13.822 14.718 22.750 4.392   2.207  0.558  H29 9PB 80 
9PB H30 H30 H 0 1 N N N 11.922 14.714 21.356 3.673   1.617  -1.643 H30 9PB 81 
9PB H31 H31 H 0 1 N N N 17.495 11.632 24.829 0.769   1.533  5.512  H31 9PB 82 
9PB H32 H32 H 0 1 N N N 18.058 13.074 21.663 4.444   -0.421 4.472  H32 9PB 83 
9PB H33 H33 H 0 1 N N N 14.159 16.187 19.448 5.583   -0.627 -0.962 H33 9PB 84 
9PB H34 H34 H 0 1 N N N 14.733 15.970 17.151 5.411   -2.970 -1.580 H34 9PB 85 
9PB H35 H35 H 0 1 N N N 16.464 15.408 15.419 5.687   -5.365 -0.872 H35 9PB 86 
9PB H36 H36 H 0 1 N N N 16.099 14.036 16.519 5.871   -4.811 0.809  H36 9PB 87 
9PB H37 H37 H 0 1 N N N 18.387 14.347 16.199 3.604   -5.363 0.298  H37 9PB 88 
9PB H38 H38 H 0 1 N N N 17.338 17.532 17.601 7.948   -3.629 -0.014 H38 9PB 89 
9PB H39 H39 H 0 1 N N N 16.248 18.898 16.025 8.615   -4.392 -2.178 H39 9PB 90 
9PB H40 H40 H 0 1 N N N 14.394 18.315 18.105 7.471   -1.670 -2.309 H40 9PB 91 
9PB H41 H41 H 0 1 N N N 15.548 20.122 19.060 9.758   -1.171 -1.832 H41 9PB 92 
9PB H42 H42 H 0 1 N N N 16.784 17.697 19.922 8.127   -1.174 0.634  H42 9PB 93 
9PB H43 H43 H 0 1 N N N 15.197 17.933 21.607 7.832   1.085  -0.093 H43 9PB 94 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9PB CBW CBX DOUB Y N 1  
9PB CBW CBV SING Y N 2  
9PB CBX CBY SING Y N 3  
9PB CBV CBU DOUB Y N 4  
9PB CBY CBT DOUB Y N 5  
9PB CBU CBT SING Y N 6  
9PB CBU CBP SING Y N 7  
9PB CBT CBS SING Y N 8  
9PB OBE CAN SING N N 9  
9PB CAP OBG SING N N 10 
9PB CAP CAO SING N N 11 
9PB CBP CBQ DOUB Y N 12 
9PB CBS CBR DOUB Y N 13 
9PB CAN CAO SING N N 14 
9PB CAN CAR SING N N 15 
9PB CAO OBD SING N N 16 
9PB CBQ CBR SING Y N 17 
9PB CBR CBN SING N N 18 
9PB CAR OBC SING N N 19 
9PB CAR CAQ SING N N 20 
9PB OBD CAM SING N N 21 
9PB CBN OBO SING N N 22 
9PB CAM CAQ SING N N 23 
9PB CAM O3  SING N N 24 
9PB OBO CBM SING N N 25 
9PB CAQ OBF SING N N 26 
9PB O3  C3  SING N N 27 
9PB OBA CAK SING N N 28 
9PB O2  C2  SING N N 29 
9PB CBM CBL SING N N 30 
9PB C3  C2  SING N N 31 
9PB C3  C4  SING N N 32 
9PB O4  C4  SING N N 33 
9PB CBL NBK SING Y N 34 
9PB CBL CBH DOUB Y N 35 
9PB NBK NBJ DOUB Y N 36 
9PB C2  C1  SING N N 37 
9PB CBH NBI SING Y N 38 
9PB C4  C5  SING N N 39 
9PB NBJ NBI SING Y N 40 
9PB C1  O1  SING N N 41 
9PB C1  O5  SING N N 42 
9PB NBI CAG SING N N 43 
9PB C5  O5  SING N N 44 
9PB C5  C6  SING N N 45 
9PB CAK CAG SING N N 46 
9PB CAK CAL SING N N 47 
9PB O1  CAL SING N N 48 
9PB CAG OAY SING N N 49 
9PB CAL CAH SING N N 50 
9PB C6  O6  SING N N 51 
9PB OAY CAI SING N N 52 
9PB CAH CAI SING N N 53 
9PB CAH OAZ SING N N 54 
9PB CAI CAJ SING N N 55 
9PB CAJ OBB SING N N 56 
9PB C4  H1  SING N N 57 
9PB C5  H2  SING N N 58 
9PB C6  H3  SING N N 59 
9PB C6  H4  SING N N 60 
9PB C3  H5  SING N N 61 
9PB CBS H6  SING N N 62 
9PB CBY H7  SING N N 63 
9PB CBX H8  SING N N 64 
9PB CBW H9  SING N N 65 
9PB CBV H10 SING N N 66 
9PB CBP H11 SING N N 67 
9PB CBQ H12 SING N N 68 
9PB CBN H13 SING N N 69 
9PB CBN H14 SING N N 70 
9PB CBM H15 SING N N 71 
9PB CBM H16 SING N N 72 
9PB CBH H17 SING N N 73 
9PB CAG H18 SING N N 74 
9PB CAK H19 SING N N 75 
9PB OBA H20 SING N N 76 
9PB CAI H21 SING N N 77 
9PB CAJ H22 SING N N 78 
9PB CAJ H23 SING N N 79 
9PB OBB H24 SING N N 80 
9PB CAH H25 SING N N 81 
9PB OAZ H26 SING N N 82 
9PB CAL H27 SING N N 83 
9PB C1  H28 SING N N 84 
9PB C2  H29 SING N N 85 
9PB O2  H30 SING N N 86 
9PB O6  H31 SING N N 87 
9PB O4  H32 SING N N 88 
9PB CAM H33 SING N N 89 
9PB CAO H34 SING N N 90 
9PB CAP H35 SING N N 91 
9PB CAP H36 SING N N 92 
9PB OBG H37 SING N N 93 
9PB CAN H38 SING N N 94 
9PB OBE H39 SING N N 95 
9PB CAR H40 SING N N 96 
9PB OBC H41 SING N N 97 
9PB CAQ H42 SING N N 98 
9PB OBF H43 SING N N 99 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9PB InChI            InChI                1.03  
;InChI=1S/C32H43N3O16/c36-9-18-21(39)24(42)25(43)31(48-18)51-29-23(41)20(11-38)49-32(27(29)45)50-28-22(40)19(10-37)47-30(26(28)44)35-8-17(33-34-35)13-46-12-14-5-6-15-3-1-2-4-16(15)7-14/h1-8,18-32,36-45H,9-13H2/t18-,19-,20-,21-,22-,23-,24+,25-,26-,27-,28+,29+,30-,31+,32+/m1/s1
;
9PB InChIKey         InChI                1.03  INTPLNBRTDNBOM-DGUZUYFASA-N 
9PB SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@H](O)[C@@H](CO)O[C@H]([C@@H]3O)n4cc(COCc5ccc6ccccc6c5)nn4)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O" 
9PB SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](CO)O[CH](O[CH]3[CH](O)[CH](CO)O[CH]([CH]3O)n4cc(COCc5ccc6ccccc6c5)nn4)[CH]2O)[CH](O)[CH](O)[CH]1O" 
9PB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)COCc3cn(nn3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O)O" 
9PB SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)COCc3cn(nn3)C4C(C(C(C(O4)CO)O)OC5C(C(C(C(O5)CO)O)OC6C(C(C(C(O6)CO)O)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9PB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-(naphthalen-2-ylmethoxymethyl)-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxy-3,5-bis(oxidanyl)oxan-4-yl]oxy-oxane-3,4,5-triol
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9PB "Create component" 2017-06-20 RCSB 
9PB "Initial release"  2018-05-02 RCSB 
# 
