data_F99
# 
_chem_comp.id                                    F99 
_chem_comp.name                                  "1-(5-chloranyl-4-methyl-benzimidazol-1-yl)-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H20 Cl N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-04-20 
_chem_comp.pdbx_modified_date                    2023-06-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        321.802 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F99 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7BX3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F99 C4  C1  C  0 1 Y N N -28.929 14.881 103.546 -2.027 0.973  -0.974 C4  F99 1  
F99 C5  C2  C  0 1 Y N N -28.454 15.118 104.824 -1.883 -0.381 -0.704 C5  F99 2  
F99 C6  C3  C  0 1 Y N N -27.395 15.995 105.099 -2.891 -1.069 -0.007 C6  F99 3  
F99 N1  N1  N  0 1 Y N N -28.854 14.657 106.065 -0.901 -1.314 -0.973 N1  F99 4  
F99 C2  C4  C  0 1 Y N N -27.275 16.424 102.751 -4.160 0.963  0.130  C2  F99 5  
F99 N   N2  N  0 1 Y N N -27.172 16.081 106.463 -2.481 -2.358 0.110  N   F99 6  
F99 C   C5  C  0 1 N N N -25.554 17.511 104.260 -5.127 -1.106 1.149  C   F99 7  
F99 O   O1  O  0 1 N N N -28.434 11.929 105.786 1.106  -0.407 0.448  O   F99 8  
F99 C1  C6  C  0 1 Y N N -26.770 16.648 104.026 -4.034 -0.380 0.407  C1  F99 9  
F99 C10 C7  C  0 1 N N N -30.706 11.277 106.148 2.779  -0.227 -1.201 C10 F99 10 
F99 C11 C8  C  0 1 N N R -30.322 9.835  106.504 3.624  0.272  -0.027 C11 F99 11 
F99 C12 C9  C  0 1 N N N -29.367 7.805  105.649 4.570  -0.363 2.112  C12 F99 12 
F99 C13 C10 C  0 1 N N N -28.559 7.575  106.870 5.968  0.069  1.663  C13 F99 13 
F99 C14 C11 C  0 1 N N N -29.211 8.265  108.064 5.842  1.203  0.641  C14 F99 14 
F99 C15 C12 C  0 1 N N S -29.487 9.727  107.774 4.993  0.724  -0.540 C15 F99 15 
F99 C3  C13 C  0 1 Y N N -28.327 15.553 102.500 -3.158 1.639  -0.553 C3  F99 16 
F99 C7  C14 C  0 1 Y N N -28.065 15.268 106.983 -1.318 -2.501 -0.455 C7  F99 17 
F99 C8  C15 C  0 1 N N N -29.944 13.713 106.318 0.356  -1.071 -1.684 C8  F99 18 
F99 C9  C16 C  0 1 N N N -29.568 12.266 106.061 1.390  -0.556 -0.716 C9  F99 19 
F99 N2  N3  N  0 1 N N N -29.545 9.241  105.416 3.798  -0.814 0.947  N2  F99 20 
F99 O1  O2  O  0 1 N N N -30.231 10.270 108.860 4.824  1.794  -1.471 O1  F99 21 
F99 CL  CL1 CL 0 0 N N N -26.613 17.302 101.412 -5.584 1.817  0.638  CL  F99 22 
F99 H1  H1  H  0 1 N N N -29.743 14.193 103.372 -1.254 1.504  -1.508 H1  F99 23 
F99 H2  H2  H  0 1 N N N -25.870 18.550 104.438 -5.845 -1.508 0.434  H2  F99 24 
F99 H3  H3  H  0 1 N N N -25.004 17.140 105.138 -4.694 -1.922 1.727  H3  F99 25 
F99 H4  H4  H  0 1 N N N -24.901 17.472 103.375 -5.632 -0.412 1.821  H4  F99 26 
F99 H5  H5  H  0 1 N N N -31.406 11.637 106.916 2.722  0.550  -1.964 H5  F99 27 
F99 H6  H6  H  0 1 N N N -31.211 11.259 105.171 3.237  -1.120 -1.625 H6  F99 28 
F99 H7  H7  H  0 1 N N N -31.247 9.257  106.646 3.120  1.112  0.452  H7  F99 29 
F99 H8  H8  H  0 1 N N N -30.353 7.333  105.773 4.656  -1.180 2.828  H8  F99 30 
F99 H9  H9  H  0 1 N N N -28.853 7.359  104.785 4.062  0.479  2.580  H9  F99 31 
F99 H10 H10 H  0 1 N N N -28.493 6.494  107.065 6.535  0.418  2.525  H10 F99 32 
F99 H11 H11 H  0 1 N N N -27.549 7.983  106.720 6.481  -0.777 1.206  H11 F99 33 
F99 H12 H12 H  0 1 N N N -30.161 7.760  108.294 5.363  2.063  1.109  H12 F99 34 
F99 H13 H13 H  0 1 N N N -28.538 8.193  108.931 6.833  1.486  0.287  H13 F99 35 
F99 H14 H14 H  0 1 N N N -28.537 10.264 107.638 5.491  -0.112 -1.031 H14 F99 36 
F99 H15 H15 H  0 1 N N N -28.674 15.401 101.489 -3.270 2.693  -0.764 H15 F99 37 
F99 H16 H16 H  0 1 N N N -28.161 15.102 108.046 -0.764 -3.427 -0.505 H16 F99 38 
F99 H17 H17 H  0 1 N N N -30.789 13.974 105.664 0.708  -2.002 -2.130 H17 F99 39 
F99 H18 H18 H  0 1 N N N -30.251 13.811 107.370 0.193  -0.332 -2.469 H18 F99 40 
F99 H19 H19 H  0 1 N N N -28.649 9.682  105.371 4.228  -1.619 0.517  H19 F99 41 
F99 H21 H21 H  0 1 N N N -29.719 10.208 109.658 5.653  2.131  -1.838 H21 F99 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F99 CL  C2  SING N N 1  
F99 C3  C2  DOUB Y N 2  
F99 C3  C4  SING Y N 3  
F99 C2  C1  SING Y N 4  
F99 C4  C5  DOUB Y N 5  
F99 C1  C   SING N N 6  
F99 C1  C6  DOUB Y N 7  
F99 C5  C6  SING Y N 8  
F99 C5  N1  SING Y N 9  
F99 C6  N   SING Y N 10 
F99 N2  C12 SING N N 11 
F99 N2  C11 SING N N 12 
F99 C12 C13 SING N N 13 
F99 O   C9  DOUB N N 14 
F99 C9  C10 SING N N 15 
F99 C9  C8  SING N N 16 
F99 N1  C8  SING N N 17 
F99 N1  C7  SING Y N 18 
F99 C10 C11 SING N N 19 
F99 N   C7  DOUB Y N 20 
F99 C11 C15 SING N N 21 
F99 C13 C14 SING N N 22 
F99 C15 C14 SING N N 23 
F99 C15 O1  SING N N 24 
F99 C4  H1  SING N N 25 
F99 C   H2  SING N N 26 
F99 C   H3  SING N N 27 
F99 C   H4  SING N N 28 
F99 C10 H5  SING N N 29 
F99 C10 H6  SING N N 30 
F99 C11 H7  SING N N 31 
F99 C12 H8  SING N N 32 
F99 C12 H9  SING N N 33 
F99 C13 H10 SING N N 34 
F99 C13 H11 SING N N 35 
F99 C14 H12 SING N N 36 
F99 C14 H13 SING N N 37 
F99 C15 H14 SING N N 38 
F99 C3  H15 SING N N 39 
F99 C7  H16 SING N N 40 
F99 C8  H17 SING N N 41 
F99 C8  H18 SING N N 42 
F99 N2  H19 SING N N 43 
F99 O1  H21 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F99 InChI            InChI                1.03  "InChI=1S/C16H20ClN3O2/c1-10-12(17)4-5-14-16(10)19-9-20(14)8-11(21)7-13-15(22)3-2-6-18-13/h4-5,9,13,15,18,22H,2-3,6-8H2,1H3/t13-,15+/m1/s1" 
F99 InChIKey         InChI                1.03  QGJXLDZCSUOUAE-HIFRSBDPSA-N                                                                                                                 
F99 SMILES_CANONICAL CACTVS               3.385 "Cc1c(Cl)ccc2n(CC(=O)C[C@H]3NCCC[C@@H]3O)cnc12"                                                                                             
F99 SMILES           CACTVS               3.385 "Cc1c(Cl)ccc2n(CC(=O)C[CH]3NCCC[CH]3O)cnc12"                                                                                                
F99 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1ncn2CC(=O)C[C@@H]3[C@H](CCCN3)O)Cl"                                                                                             
F99 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1ncn2CC(=O)CC3C(CCCN3)O)Cl"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           F99 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-(5-chloranyl-4-methyl-benzimidazol-1-yl)-3-[(2~{R},3~{S})-3-oxidanylpiperidin-2-yl]propan-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F99 "Create component" 2020-04-20 PDBJ 
F99 "Initial release"  2023-07-05 RCSB 
# 
