data_EU9
#

_chem_comp.id                                   EU9
_chem_comp.name                                 "[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3R)-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]-[(2-nitrophenyl)methyl]sulfanium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H26 N7 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-01-24
_chem_comp.pdbx_modified_date                   2020-10-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       520.539
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EU9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6LTV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EU9  O17  O1   O   0  1  N  N  N  -18.085  34.679  -29.701   1.527   4.621   1.684  O17   EU9   1  
EU9  C15  C1   C   0  1  N  N  N  -17.454  33.983  -28.892   1.909   4.200   0.618  C15   EU9   2  
EU9  O16  O2   O   0  1  N  N  N  -16.354  34.266  -28.483   3.003   4.722   0.043  O16   EU9   3  
EU9  C14  C2   C   0  1  N  N  R  -18.184  32.848  -28.171   1.159   3.084  -0.064  C14   EU9   4  
EU9  N18  N1   N   0  1  N  N  N  -17.295  31.976  -27.446  -0.204   3.007   0.479  N18   EU9   5  
EU9  C13  C3   C   0  1  N  N  N  -19.346  32.307  -28.976   1.883   1.758   0.184  C13   EU9   6  
EU9  C12  C4   C   0  1  N  N  N  -19.713  30.834  -28.651   1.194   0.646  -0.609  C12   EU9   7  
EU9  S11  S1   S   1  1  N  N  R  -19.619  29.842  -29.999   1.953  -0.949  -0.197  S11   EU9   8  
EU9  C7   C5   C   0  1  N  N  N  -20.470  30.616  -31.233   3.346  -1.049  -1.355  C7    EU9   9  
EU9  C3   C6   C   0  1  Y  N  N  -20.304  30.501  -32.750   4.499  -0.237  -0.825  C3    EU9  10  
EU9  C21  C7   C   0  1  Y  N  N  -21.461  30.110  -33.476   4.703   1.052  -1.280  C21   EU9  11  
EU9  C1   C8   C   0  1  Y  N  N  -21.450  30.031  -34.876   5.761   1.798  -0.794  C1    EU9  12  
EU9  C61  C9   C   0  1  Y  N  N  -20.276  30.356  -35.572   6.615   1.254   0.147  C61   EU9  13  
EU9  C51  C10  C   0  1  Y  N  N  -19.120  30.727  -34.866   6.411  -0.035   0.603  C51   EU9  14  
EU9  C41  C11  C   0  1  Y  N  N  -19.122  30.855  -33.468   5.350  -0.778   0.121  C41   EU9  15  
EU9  N8   N2   N   1  1  N  N  N  -17.919  31.226  -32.827   5.131  -2.159   0.609  N8    EU9  16  
EU9  O10  O3   O   0  1  N  N  N  -17.907  31.697  -31.528   5.949  -2.681   1.345  O10   EU9  17  
EU9  O9   O4   O  -1  1  N  N  N  -16.684  31.090  -33.477   4.133  -2.772   0.274  O9    EU9  18  
EU9  C19  C12  C   0  1  N  N  N  -20.599  28.568  -29.372   0.773  -2.149  -0.874  C19   EU9  19  
EU9  C20  C13  C   0  1  N  N  S  -20.597  27.287  -30.189  -0.479  -2.185   0.005  C20   EU9  20  
EU9  O24  O5   O   0  1  N  N  N  -20.862  27.535  -31.537  -1.225  -0.956  -0.133  O24   EU9  21  
EU9  C23  C14  C   0  1  N  N  R  -20.343  26.431  -32.301  -2.564  -1.272   0.304  C23   EU9  22  
EU9  C22  C15  C   0  1  N  N  R  -19.533  25.584  -31.328  -2.848  -2.675  -0.278  C22   EU9  23  
EU9  O26  O6   O   0  1  N  N  N  -20.298  24.440  -30.953  -3.609  -3.456   0.646  O26   EU9  24  
EU9  C27  C16  C   0  1  N  N  S  -19.296  26.550  -30.164  -1.445  -3.289  -0.480  C211  EU9  25  
EU9  O25  O7   O   0  1  N  N  N  -19.065  25.804  -28.987  -1.296  -4.468   0.313  O25   EU9  26  
EU9  N9   N3   N   0  1  Y  N  N  -19.440  26.907  -33.386  -3.518  -0.296  -0.228  N9    EU9  27  
EU9  C8   C17  C   0  1  Y  N  N  -18.128  27.216  -33.305  -3.348   0.476  -1.339  C8    EU9  28  
EU9  N7   N4   N   0  1  Y  N  N  -17.646  27.547  -34.539  -4.393   1.230  -1.520  N7    EU9  29  
EU9  C5   C18  C   0  1  Y  N  N  -18.676  27.500  -35.406  -5.298   0.990  -0.541  C5    EU9  30  
EU9  C6   C19  C   0  1  Y  N  N  -18.853  27.723  -36.767  -6.575   1.489  -0.232  C6    EU9  31  
EU9  N6   N5   N   0  1  N  N  N  -17.801  28.095  -37.553  -7.165   2.461  -1.020  N6    EU9  32  
EU9  N1   N6   N   0  1  Y  N  N  -20.054  27.516  -37.317  -7.202   1.006   0.835  N1    EU9  33  
EU9  C2   C20  C   0  1  Y  N  N  -21.112  27.148  -36.593  -6.646   0.078   1.594  C2    EU9  34  
EU9  N3   N7   N   0  1  Y  N  N  -21.032  26.915  -35.258  -5.453  -0.418   1.343  N3    EU9  35  
EU9  C4   C21  C   0  1  Y  N  N  -19.843  27.054  -34.638  -4.750   0.004   0.297  C4    EU9  36  
EU9  H1   H1   H   0  1  N  N  N  -16.070  35.083  -28.876   3.453   5.433   0.520  H1    EU9  37  
EU9  H2   H2   H   0  1  N  N  N  -18.699  33.389  -27.364   1.114   3.278  -1.135  H2    EU9  38  
EU9  H3   H3   H   0  1  N  N  N  -16.597  32.522  -26.982  -0.188   2.827   1.471  H3    EU9  39  
EU9  H4   H4   H   0  1  N  N  N  -17.817  31.456  -26.769  -0.723   3.846   0.271  H4    EU9  40  
EU9  H6   H6   H   0  1  N  N  N  -19.086  32.371  -30.043   2.920   1.845  -0.138  H6    EU9  41  
EU9  H7   H7   H   0  1  N  N  N  -20.227  32.935  -28.775   1.851   1.520   1.247  H7    EU9  42  
EU9  H8   H8   H   0  1  N  N  N  -20.741  30.804  -28.261   0.134   0.621  -0.355  H8    EU9  43  
EU9  H9   H9   H   0  1  N  N  N  -19.019  30.457  -27.886   1.307   0.837  -1.676  H9    EU9  44  
EU9  H10  H10  H   0  1  N  N  N  -20.333  31.688  -31.026   3.654  -2.089  -1.463  H10   EU9  45  
EU9  H11  H11  H   0  1  N  N  N  -21.519  30.339  -31.053   3.041  -0.658  -2.325  H11   EU9  46  
EU9  H12  H12  H   0  1  N  N  N  -22.367  29.869  -32.939   4.036   1.477  -2.016  H12   EU9  47  
EU9  H13  H13  H   0  1  N  N  N  -22.335  29.723  -35.412   5.921   2.805  -1.150  H13   EU9  48  
EU9  H14  H14  H   0  1  N  N  N  -20.261  30.321  -36.651   7.442   1.836   0.526  H14   EU9  49  
EU9  H15  H15  H   0  1  N  N  N  -18.208  30.918  -35.412   7.078  -0.460   1.338  H15   EU9  50  
EU9  H16  H16  H   0  1  N  N  N  -21.635  28.933  -29.314   0.498  -1.857  -1.887  H16   EU9  51  
EU9  H17  H17  H   0  1  N  N  N  -20.238  28.327  -28.361   1.231  -3.138  -0.893  H17   EU9  52  
EU9  H18  H18  H   0  1  N  N  N  -21.373  26.625  -29.779  -0.206  -2.350   1.047  H18   EU9  53  
EU9  H19  H19  H   0  1  N  N  N  -21.160  25.829  -32.725  -2.612  -1.297   1.393  H19   EU9  54  
EU9  H20  H20  H   0  1  N  N  N  -18.573  25.298  -31.782  -3.372  -2.594  -1.230  H20   EU9  55  
EU9  H21  H21  H   0  1  N  N  N  -19.797  23.908  -30.346  -3.816  -4.346   0.331  H21   EU9  56  
EU9  H22  H22  H   0  1  N  N  N  -18.460  27.227  -30.395  -1.273  -3.511  -1.533  H22   EU9  57  
EU9  H23  H23  H   0  1  N  N  N  -18.917  26.397  -28.260  -1.879  -5.194   0.053  H23   EU9  58  
EU9  H24  H24  H   0  1  N  N  N  -17.545  27.203  -32.396  -2.474   0.463  -1.974  H24   EU9  59  
EU9  H25  H25  H   0  1  N  N  N  -18.103  28.165  -38.504  -6.697   2.806  -1.797  H25   EU9  60  
EU9  H26  H26  H   0  1  N  N  N  -17.454  28.982  -37.247  -8.047   2.797  -0.797  H26   EU9  61  
EU9  H27  H27  H   0  1  N  N  N  -22.066  27.031  -37.086  -7.191  -0.287   2.451  H27   EU9  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EU9  N6   C6   SING  N  N   1  
EU9  N1   C6   DOUB  Y  N   2  
EU9  N1   C2   SING  Y  N   3  
EU9  C6   C5   SING  Y  N   4  
EU9  C2   N3   DOUB  Y  N   5  
EU9  C61  C1   DOUB  Y  N   6  
EU9  C61  C51  SING  Y  N   7  
EU9  C5   C4   DOUB  Y  N   8  
EU9  C5   N7   SING  Y  N   9  
EU9  N3   C4   SING  Y  N  10  
EU9  C1   C21  SING  Y  N  11  
EU9  C51  C41  DOUB  Y  N  12  
EU9  C4   N9   SING  Y  N  13  
EU9  N7   C8   DOUB  Y  N  14  
EU9  O9   N8   SING  N  N  15  
EU9  C21  C3   DOUB  Y  N  16  
EU9  C41  N8   SING  N  N  17  
EU9  C41  C3   SING  Y  N  18  
EU9  N9   C8   SING  Y  N  19  
EU9  N9   C23  SING  N  N  20  
EU9  N8   O10  DOUB  N  N  21  
EU9  C3   C7   SING  N  N  22  
EU9  C23  O24  SING  N  N  23  
EU9  C23  C22  SING  N  N  24  
EU9  O24  C20  SING  N  N  25  
EU9  C22  O26  SING  N  N  26  
EU9  C22  C27  SING  N  N  27  
EU9  C7   S11  SING  N  N  28  
EU9  C20  C27  SING  N  N  29  
EU9  C20  C19  SING  N  N  30  
EU9  C27  O25  SING  N  N  31  
EU9  S11  C19  SING  N  N  32  
EU9  S11  C12  SING  N  N  33  
EU9  O17  C15  DOUB  N  N  34  
EU9  C13  C12  SING  N  N  35  
EU9  C13  C14  SING  N  N  36  
EU9  C15  O16  SING  N  N  37  
EU9  C15  C14  SING  N  N  38  
EU9  C14  N18  SING  N  N  39  
EU9  O16  H1   SING  N  N  40  
EU9  C14  H2   SING  N  N  41  
EU9  N18  H3   SING  N  N  42  
EU9  N18  H4   SING  N  N  43  
EU9  C13  H6   SING  N  N  44  
EU9  C13  H7   SING  N  N  45  
EU9  C12  H8   SING  N  N  46  
EU9  C12  H9   SING  N  N  47  
EU9  C7   H10  SING  N  N  48  
EU9  C7   H11  SING  N  N  49  
EU9  C21  H12  SING  N  N  50  
EU9  C1   H13  SING  N  N  51  
EU9  C61  H14  SING  N  N  52  
EU9  C51  H15  SING  N  N  53  
EU9  C19  H16  SING  N  N  54  
EU9  C19  H17  SING  N  N  55  
EU9  C20  H18  SING  N  N  56  
EU9  C23  H19  SING  N  N  57  
EU9  C22  H20  SING  N  N  58  
EU9  O26  H21  SING  N  N  59  
EU9  C27  H22  SING  N  N  60  
EU9  O25  H23  SING  N  N  61  
EU9  C8   H24  SING  N  N  62  
EU9  N6   H25  SING  N  N  63  
EU9  N6   H26  SING  N  N  64  
EU9  C2   H27  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EU9  InChI             InChI                 1.03   "InChI=1S/C21H25N7O7S/c22-12(21(31)32)5-6-36(7-11-3-1-2-4-13(11)28(33)34)8-14-16(29)17(30)20(35-14)27-10-26-15-18(23)24-9-25-19(15)27/h1-4,9-10,12,14,16-17,20,29-30H,5-8,22H2,(H2-,23,24,25,31,32)/p+1/t12-,14-,16-,17-,20-,36-/m1/s1"  
EU9  InChIKey          InChI                 1.03   UTGYKEAAXXLVQJ-OUPAZNFWSA-O  
EU9  SMILES_CANONICAL  CACTVS                3.385  "N[C@H](CC[S@@+](C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccccc4[N](=O)=O)C(O)=O"  
EU9  SMILES            CACTVS                3.385  "N[CH](CC[S+](C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccccc4[N](=O)=O)C(O)=O"  
EU9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)C[S+](CC[C@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N(=O)=O"  
EU9  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(c(c1)C[S+](CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N(=O)=O"  
#
_pdbx_chem_comp_identifier.comp_id          EU9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[(3~{R})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]-[(2-nitrophenyl)methyl]sulfanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EU9  "Create component"  2020-01-24  PDBJ  
EU9  "Initial release"   2020-10-21  RCSB  
##
