data_JM8
# 
_chem_comp.id                                    JM8 
_chem_comp.name                                  "N~5~-[(3-(ethylsulfanyl)propanimidoyl]-L-ornithine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H21 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.358 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JM8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JT4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JM8 C    C    C 0 1 N N N 8.954  -3.397 24.553 6.014  -0.259 0.094  C    JM8 1  
JM8 N    N    N 0 1 N N N 9.711  -1.639 26.029 4.789  1.770  -0.445 N    JM8 2  
JM8 C1   C1   C 0 1 N N N 13.969 -0.317 23.235 -1.405 -0.234 -0.082 C1   JM8 3  
JM8 C2   C2   C 0 1 N N N 14.261 0.367  21.928 -2.671 0.501  0.275  C2   JM8 4  
JM8 C3   C3   C 0 1 N N N 15.195 1.518  22.230 -3.882 -0.333 -0.148 C3   JM8 5  
JM8 S4   S4   S 0 1 N N N 14.223 2.786  22.966 -5.406 0.553  0.282  S4   JM8 6  
JM8 C5   C5   C 0 1 N N N 14.056 3.995  21.670 -6.708 -0.575 -0.287 C5   JM8 7  
JM8 C6   C6   C 0 1 N N N 13.524 3.396  20.365 -8.078 0.038  0.008  C6   JM8 8  
JM8 CA   CA   C 0 1 N N S 9.131  -1.895 24.726 4.752  0.528  0.339  CA   JM8 9  
JM8 CB   CB   C 0 1 N N N 9.986  -1.293 23.595 3.541  -0.306 -0.084 CB   JM8 10 
JM8 CD   CD   C 0 1 N N N 11.781 0.402  23.368 1.044  -0.393 -0.145 CD   JM8 11 
JM8 NE   NE   N 0 1 N N N 12.697 -0.446 23.654 -0.186 0.322  0.203  NE   JM8 12 
JM8 CG   CG   C 0 1 N N N 10.340 0.185  23.828 2.255  0.441  0.278  CG   JM8 13 
JM8 NH   NH   N 0 1 N N N 14.955 -0.744 23.890 -1.470 -1.391 -0.658 NH   JM8 14 
JM8 OA1  OA1  O 0 1 N N N 8.400  -3.830 23.524 6.682  -0.039 -0.888 OA1  JM8 15 
JM8 OA2  OA2  O 0 1 N N N 9.362  -4.169 25.445 6.398  -1.200 0.970  OA2  JM8 16 
JM8 HN   HN   H 0 1 N N N 9.832  -0.654 26.153 5.543  2.367  -0.140 HN   JM8 17 
JM8 HNA  HNA  H 0 1 N N N 9.103  -1.992 26.740 4.861  1.572  -1.432 HNA  JM8 18 
JM8 H2   H2   H 0 1 N N N 14.735 -0.336 21.227 -2.703 0.668  1.352  H2   JM8 19 
JM8 H2A  H2A  H 0 1 N N N 13.330 0.740  21.476 -2.692 1.461  -0.242 H2A  JM8 20 
JM8 H3   H3   H 0 1 N N N 15.989 1.195  22.920 -3.851 -0.500 -1.224 H3   JM8 21 
JM8 H3A  H3A  H 0 1 N N N 15.663 1.884  21.304 -3.861 -1.292 0.369  H3A  JM8 22 
JM8 H5   H5   H 0 1 N N N 13.353 4.771  22.008 -6.605 -0.736 -1.360 H5   JM8 23 
JM8 H5A  H5A  H 0 1 N N N 15.046 4.431  21.473 -6.616 -1.528 0.233  H5A  JM8 24 
JM8 H6   H6   H 0 1 N N N 13.442 4.187  19.605 -8.861 -0.640 -0.334 H6   JM8 25 
JM8 H6A  H6A  H 0 1 N N N 14.215 2.617  20.011 -8.181 0.198  1.081  H6A  JM8 26 
JM8 H6B  H6B  H 0 1 N N N 12.532 2.954  20.542 -8.170 0.991  -0.512 H6B  JM8 27 
JM8 HA   HA   H 0 1 N N N 8.148  -1.404 24.666 4.674  0.770  1.399  HA   JM8 28 
JM8 HB   HB   H 0 1 N N N 10.923 -1.866 23.528 3.572  -0.473 -1.161 HB   JM8 29 
JM8 HBA  HBA  H 0 1 N N N 9.418  -1.368 22.656 3.562  -1.265 0.433  HBA  JM8 30 
JM8 HD   HD   H 0 1 N N N 12.100 1.353  23.820 1.065  -1.352 0.373  HD   JM8 31 
JM8 HG   HG   H 0 1 N N N 9.660  0.830  23.252 2.224  0.608  1.355  HG   JM8 32 
JM8 HGA  HGA  H 0 1 N N N 10.245 0.430  24.896 2.234  1.400  -0.239 HGA  JM8 33 
JM8 HNH  HNH  H 0 1 N N N 15.821 -0.558 23.427 -2.333 -1.785 -0.859 HNH  JM8 34 
JM8 HOA2 HOA2 H 0 0 N N N 9.178  -5.067 25.196 7.214  -1.679 0.771  HOA2 JM8 35 
JM8 H20  H20  H 0 1 N N N 11.742 0.443  22.269 1.076  -0.560 -1.221 H20  JM8 36 
JM8 H21  H21  H 0 1 N N N 12.456 -1.239 24.213 -0.138 1.189  0.635  H21  JM8 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JM8 C   CA   SING N N 1  
JM8 C   OA2  SING N N 2  
JM8 N   HN   SING N N 3  
JM8 N   HNA  SING N N 4  
JM8 C1  NE   SING N N 5  
JM8 C1  NH   DOUB N N 6  
JM8 C2  C1   SING N N 7  
JM8 C2  C3   SING N N 8  
JM8 C2  H2   SING N N 9  
JM8 C2  H2A  SING N N 10 
JM8 C3  S4   SING N N 11 
JM8 C3  H3   SING N N 12 
JM8 C3  H3A  SING N N 13 
JM8 C5  S4   SING N N 14 
JM8 C5  H5   SING N N 15 
JM8 C5  H5A  SING N N 16 
JM8 C6  C5   SING N N 17 
JM8 C6  H6   SING N N 18 
JM8 C6  H6A  SING N N 19 
JM8 C6  H6B  SING N N 20 
JM8 CA  N    SING N N 21 
JM8 CA  HA   SING N N 22 
JM8 CB  CA   SING N N 23 
JM8 CB  CG   SING N N 24 
JM8 CB  HB   SING N N 25 
JM8 CB  HBA  SING N N 26 
JM8 CD  NE   SING N N 27 
JM8 CD  CG   SING N N 28 
JM8 CD  HD   SING N N 29 
JM8 CG  HG   SING N N 30 
JM8 CG  HGA  SING N N 31 
JM8 NH  HNH  SING N N 32 
JM8 OA1 C    DOUB N N 33 
JM8 OA2 HOA2 SING N N 34 
JM8 CD  H20  SING N N 35 
JM8 NE  H21  SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JM8 SMILES           ACDLabs              11.02 "O=C(O)C(N)CCCNC(=[N@H])CCSCC"                                                                                
JM8 SMILES_CANONICAL CACTVS               3.352 "CCSCCC(=N)NCCC[C@H](N)C(O)=O"                                                                                
JM8 SMILES           CACTVS               3.352 "CCSCCC(=N)NCCC[CH](N)C(O)=O"                                                                                 
JM8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(\CCSCC)/NCCC[C@@H](C(=O)O)N"                                                                         
JM8 SMILES           "OpenEye OEToolkits" 1.7.0 "CCSCCC(=N)NCCCC(C(=O)O)N"                                                                                    
JM8 InChI            InChI                1.03  "InChI=1S/C10H21N3O2S/c1-2-16-7-5-9(12)13-6-3-4-8(11)10(14)15/h8H,2-7,11H2,1H3,(H2,12,13)(H,14,15)/t8-/m0/s1" 
JM8 InChIKey         InChI                1.03  HAZXKSBWYNTCGM-QMMMGPOBSA-N                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JM8 "SYSTEMATIC NAME" ACDLabs              11.02 "N~5~-[(1E)-3-(ethylsulfanyl)propanimidoyl]-L-ornithine"            
JM8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(3-ethylsulfanylpropanimidoylamino)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JM8 "Create component"  2009-09-15 RCSB 
JM8 "Modify descriptor" 2011-06-04 RCSB 
# 
