data_2P8
# 
_chem_comp.id                                    2P8 
_chem_comp.name                                  "(2S)-N-benzyl-2-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)pyrrolidine-1-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H27 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.435 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2P8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                "PMQ PRO TPK" 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2P8 C17  C17  C 0 1 N N N N N N 41.570 37.333 84.026 1.426  -0.441 0.635  C17  PMQ 1  
2P8 O18  O18  O 0 1 N N N N N N 42.059 37.219 82.904 1.009  -1.576 0.503  O18  PMQ 2  
2P8 N19  N19  N 0 1 N N N N N N 42.330 37.792 85.022 2.710  -0.157 0.338  N19  PMQ 3  
2P8 C20  C20  C 0 1 N N N N N N 43.740 38.170 84.882 3.601  -1.215 -0.145 C20  PMQ 4  
2P8 C21  C21  C 0 1 Y N N N N N 44.499 37.079 85.613 4.970  -0.639 -0.403 C21  PMQ 5  
2P8 C22  C22  C 0 1 Y N N N N N 45.134 37.352 86.813 5.914  -0.623 0.607  C22  PMQ 6  
2P8 C23  C23  C 0 1 Y N N N N N 45.825 36.334 87.491 7.170  -0.095 0.370  C23  PMQ 7  
2P8 C24  C24  C 0 1 Y N N N N N 45.859 35.033 86.974 7.481  0.416  -0.876 C24  PMQ 8  
2P8 C25  C25  C 0 1 Y N N N N N 45.202 34.770 85.771 6.537  0.399  -1.885 C25  PMQ 9  
2P8 C26  C26  C 0 1 Y N N N N N 44.542 35.794 85.098 5.283  -0.133 -1.650 C26  PMQ 10 
2P8 N16  N16  N 0 1 N N N N N N 40.294 37.037 84.301 0.605  0.533  1.074  N    PRO 11 
2P8 C12  C12  C 0 1 N N S N N N 39.366 36.537 83.302 -0.812 0.364  1.428  CA   PRO 12 
2P8 C10  C10  C 0 1 N N N N N N 38.933 37.628 82.377 -1.581 -0.142 0.235  C    PRO 13 
2P8 O11  O11  O 0 1 N N N N N N 39.165 38.812 82.617 -1.110 -0.042 -0.878 O    PRO 14 
2P8 C13  C13  C 0 1 N N N N N N 38.147 36.042 84.086 -1.347 1.748  1.849  CB   PRO 15 
2P8 C14  C14  C 0 1 N N N N N N 38.186 36.939 85.308 -0.354 2.727  1.169  CG   PRO 16 
2P8 C15  C15  C 0 1 N N N N N N 39.653 37.196 85.603 0.980  1.943  1.285  CD   PRO 17 
2P8 C1   C1   C 0 1 N N R N N N 36.381 38.723 80.676 -4.094 0.062  -1.533 C    TPK 18 
2P8 O2   O2   O 0 1 N N N N N N 35.499 37.627 80.738 -5.065 -0.345 -2.500 O    TPK 19 
2P8 C3   C3   C 0 1 N N N N N N 36.208 39.236 82.105 -4.689 1.153  -0.641 C3   TPK 20 
2P8 O4   O4   O 0 1 N N N N N N 37.025 40.363 82.330 -4.945 2.321  -1.424 O4   TPK 21 
2P8 C5   C5   C 0 1 N N S N N N 37.804 38.220 80.320 -3.695 -1.139 -0.673 CA   TPK 22 
2P8 C6   C6   C 0 1 N N N N N N 37.773 37.380 79.033 -4.948 -1.745 -0.006 CB   TPK 23 
2P8 C7   C7   C 0 1 N N N N N N 37.643 35.920 79.425 -4.436 -2.135 1.406  CG   TPK 24 
2P8 C8   C8   C 0 1 N N N N N N 37.984 35.845 80.914 -3.436 -0.989 1.701  CD   TPK 25 
2P8 N9   N9   N 0 1 N N N N N N 38.263 37.232 81.302 -2.794 -0.705 0.404  N    TPK 26 
2P8 HN19 HN19 H 0 0 N N N N N N 41.910 37.884 85.925 3.043  0.748  0.443  HN19 PMQ 27 
2P8 H20  H20  H 0 1 N N N N N N 44.031 38.202 83.822 3.673  -2.001 0.607  H20  PMQ 28 
2P8 H20A H20A H 0 0 N N N N N N 43.928 39.151 85.344 3.203  -1.632 -1.070 H20A PMQ 29 
2P8 H22  H22  H 0 1 N N N N N N 45.098 38.348 87.228 5.671  -1.023 1.580  H22  PMQ 30 
2P8 H23  H23  H 0 1 N N N N N N 46.334 36.556 88.417 7.907  -0.082 1.159  H23  PMQ 31 
2P8 H24  H24  H 0 1 N N N N N N 46.384 34.247 87.497 8.462  0.829  -1.060 H24  PMQ 32 
2P8 H25  H25  H 0 1 N N N N N N 45.206 33.771 85.362 6.780  0.799  -2.859 H25  PMQ 33 
2P8 H26  H26  H 0 1 N N N N N N 44.055 35.583 84.158 4.547  -0.149 -2.440 H26  PMQ 34 
2P8 H12  H12  H 0 1 N N N N N N 39.808 35.705 82.734 -0.906 -0.338 2.257  HA   PRO 35 
2P8 H13  H13  H 0 1 N N N N N N 37.218 36.183 83.514 -2.359 1.902  1.473  HB2  PRO 36 
2P8 H13A H13A H 0 0 N N N N N N 38.251 34.982 84.362 -1.317 1.860  2.933  HB3  PRO 37 
2P8 H14  H14  H 0 1 N N N N N N 37.668 37.887 85.101 -0.623 2.895  0.126  HG2  PRO 38 
2P8 H14A H14A H 0 0 N N N N N N 37.708 36.439 86.163 -0.299 3.670  1.714  HG3  PRO 39 
2P8 H15  H15  H 0 1 N N N N N N 39.803 38.213 85.994 1.417  2.081  2.274  HD2  PRO 40 
2P8 H15A H15A H 0 0 N N N N N N 40.043 36.464 86.326 1.678  2.266  0.512  HD3  PRO 41 
2P8 H1   H1   H 0 1 N N N N N N 36.054 39.483 79.951 -3.213 0.451  -2.044 H1   TPK 42 
2P8 HO2  HO2  H 0 1 N N N N N N 35.488 37.181 79.899 -5.877 -0.702 -2.115 HO   TPK 43 
2P8 H3   H3   H 0 1 N N N N N N 35.156 39.515 82.264 -5.622 0.797  -0.205 H3   TPK 44 
2P8 H3A  H3A  H 0 1 N N N N N N 36.487 38.440 82.811 -3.985 1.396  0.155  H3A  TPK 45 
2P8 HO4  HO4  H 0 1 N N N N N N 37.921 40.082 82.475 -5.324 3.056  -0.922 HO4  TPK 46 
2P8 H5   H5   H 0 1 N N N N N N 38.504 39.063 80.224 -3.204 -1.890 -1.291 HA   TPK 47 
2P8 H6   H6   H 0 1 N N N N N N 36.914 37.678 78.414 -5.745 -1.005 0.064  HB2  TPK 48 
2P8 H6A  H6A  H 0 1 N N N N N N 38.703 37.532 78.466 -5.286 -2.627 -0.550 HB3  TPK 49 
2P8 H7   H7   H 0 1 N N N N N N 36.615 35.569 79.251 -5.251 -2.138 2.130  HG2  TPK 50 
2P8 H7A  H7A  H 0 1 N N N N N N 38.344 35.305 78.842 -3.930 -3.099 1.385  HG3  TPK 51 
2P8 H8   H8   H 0 1 N N N N N N 37.134 35.445 81.487 -3.965 -0.107 2.063  HD2  TPK 52 
2P8 H8A  H8A  H 0 1 N N N N N N 38.868 35.211 81.078 -2.693 -1.312 2.430  HD3  TPK 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2P8 C1  O2   SING N N 1  
2P8 C1  C3   SING N N 2  
2P8 C1  C5   SING N N 3  
2P8 C3  O4   SING N N 4  
2P8 C5  C6   SING N N 5  
2P8 C5  N9   SING N N 6  
2P8 C6  C7   SING N N 7  
2P8 C7  C8   SING N N 8  
2P8 C8  N9   SING N N 9  
2P8 N9  C10  SING N N 10 
2P8 C10 O11  DOUB N N 11 
2P8 C10 C12  SING N N 12 
2P8 C12 C13  SING N N 13 
2P8 C12 N16  SING N N 14 
2P8 C13 C14  SING N N 15 
2P8 C14 C15  SING N N 16 
2P8 C15 N16  SING N N 17 
2P8 N16 C17  SING N N 18 
2P8 C17 O18  DOUB N N 19 
2P8 C17 N19  SING N N 20 
2P8 N19 C20  SING N N 21 
2P8 C20 C21  SING N N 22 
2P8 C21 C22  DOUB Y N 23 
2P8 C21 C26  SING Y N 24 
2P8 C22 C23  SING Y N 25 
2P8 C23 C24  DOUB Y N 26 
2P8 C24 C25  SING Y N 27 
2P8 C25 C26  DOUB Y N 28 
2P8 C1  H1   SING N N 29 
2P8 O2  HO2  SING N N 30 
2P8 C3  H3   SING N N 31 
2P8 C3  H3A  SING N N 32 
2P8 O4  HO4  SING N N 33 
2P8 C5  H5   SING N N 34 
2P8 C6  H6   SING N N 35 
2P8 C6  H6A  SING N N 36 
2P8 C7  H7   SING N N 37 
2P8 C7  H7A  SING N N 38 
2P8 C8  H8   SING N N 39 
2P8 C8  H8A  SING N N 40 
2P8 C12 H12  SING N N 41 
2P8 C13 H13  SING N N 42 
2P8 C13 H13A SING N N 43 
2P8 C14 H14  SING N N 44 
2P8 C14 H14A SING N N 45 
2P8 C15 H15  SING N N 46 
2P8 C15 H15A SING N N 47 
2P8 N19 HN19 SING N N 48 
2P8 C20 H20  SING N N 49 
2P8 C20 H20A SING N N 50 
2P8 C22 H22  SING N N 51 
2P8 C23 H23  SING N N 52 
2P8 C24 H24  SING N N 53 
2P8 C25 H25  SING N N 54 
2P8 C26 H26  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2P8 InChI            InChI                1.03  "InChI=1S/C19H27N3O4/c23-13-17(24)15-8-4-10-21(15)18(25)16-9-5-11-22(16)19(26)20-12-14-6-2-1-3-7-14/h1-3,6-7,15-17,23-24H,4-5,8-13H2,(H,20,26)/t15-,16-,17-/m0/s1" 
2P8 InChIKey         InChI                1.03  KPSYULVHJGJVEA-ULQDDVLXSA-N                                                                                                                                        
2P8 SMILES           ACDLabs              12.01 "O=C(N1C(C(O)CO)CCC1)C3N(C(=O)NCc2ccccc2)CCC3"                                                                                                                     
2P8 SMILES_CANONICAL CACTVS               3.370 "OC[C@H](O)[C@@H]1CCCN1C(=O)[C@@H]2CCCN2C(=O)NCc3ccccc3"                                                                                                           
2P8 SMILES           CACTVS               3.370 "OC[CH](O)[CH]1CCCN1C(=O)[CH]2CCCN2C(=O)NCc3ccccc3"                                                                                                                
2P8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)N2CCC[C@H]2C(=O)N3CCC[C@H]3[C@H](CO)O"                                                                                                           
2P8 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)N2CCCC2C(=O)N3CCCC3C(CO)O"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2P8 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-N-benzyl-2-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)pyrrolidine-1-carboxamide"           
2P8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[(2S)-2-[(1R)-1,2-bis(oxidanyl)ethyl]pyrrolidin-1-yl]carbonyl-N-(phenylmethyl)pyrrolidine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2P8 "Create component" 2012-03-15 EBI  
2P8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2P8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
