data_F86
# 
_chem_comp.id                                    F86 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAD 
_chem_comp.formula                               "C12 H14 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Remdesivir, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-04-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        371.243 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F86 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7BV2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F86 C8  C1  C 0 1 N N N N N N 90.089 93.714 102.212 0.974  -1.667 -1.653 C8  F86 1  
F86 C5  C2  C 0 1 Y N N N N N 91.043 92.580 104.194 2.076  -0.661 0.284  C5  F86 2  
F86 C6  C3  C 0 1 N N N N N N 93.646 90.983 101.106 -2.671 -0.580 0.546  C6  F86 3  
F86 N1  N1  N 0 1 Y N N N N N 90.372 93.279 105.194 2.582  0.513  -0.135 N1  F86 4  
F86 C2  C4  C 0 1 N N R N N N 92.527 94.119 102.804 0.467  -2.555 0.603  C2  F86 5  
F86 N3  N2  N 0 1 N N N N N N 89.132 94.151 101.727 1.096  -1.946 -2.747 N3  F86 6  
F86 C4  C5  C 0 1 N N R N N N 92.877 92.286 101.308 -1.476 -1.272 -0.114 C4  F86 7  
F86 O2  O1  O 0 1 N N N N N N 92.236 95.336 102.134 0.919  -3.741 -0.054 O2  F86 8  
F86 N2  N3  N 0 1 Y N N N N N 89.857 94.508 105.120 2.171  1.446  -1.098 N2  F86 9  
F86 O4  O2  O 0 1 N N N N N N 93.558 90.117 102.223 -3.051 0.557  -0.231 O4  F86 10 
F86 N4  N4  N 0 1 Y N N N N N 89.204 94.166 107.454 3.988  2.790  -0.624 N4  F86 11 
F86 C7  C6  C 0 1 Y N N N N N 91.404 91.340 104.711 2.879  -1.170 1.256  C7  F86 12 
F86 O6  O3  O 0 1 N N N N N N 92.596 88.024 103.361 -5.656 0.699  0.090  O6  F86 13 
F86 C1  C7  C 0 1 N N R N N N 91.312 93.155 102.826 0.817  -1.305 -0.235 C1  F86 14 
F86 C10 C8  C 0 1 Y N N N N N 90.974 91.189 106.069 3.933  -0.277 1.453  C10 F86 15 
F86 C11 C9  C 0 1 Y N N N N N 89.741 92.925 107.450 4.447  1.965  0.303  C11 F86 16 
F86 C12 C10 C 0 1 Y N N N N N 89.278 94.874 106.294 2.873  2.527  -1.302 C12 F86 17 
F86 C3  C11 C 0 1 N N S N N N 93.634 93.333 102.101 -1.076 -2.533 0.684  C3  F86 18 
F86 C9  C12 C 0 1 Y N N N N N 90.358 92.437 106.276 3.737  0.773  0.577  C9  F86 19 
F86 N5  N5  N 0 1 N N N N N N 89.647 92.176 108.620 5.605  2.263  0.991  N5  F86 20 
F86 O1  O4  O 0 1 N N N N N N 91.691 92.036 102.032 -0.311 -0.419 -0.065 O1  F86 21 
F86 O3  O5  O 0 1 N N N N N N 94.420 94.107 101.216 -1.627 -3.704 0.079  O3  F86 22 
F86 O5  O6  O 0 1 N N N N N N 93.876 87.784 101.166 -4.078 2.024  1.548  O5  F86 23 
F86 P1  P1  P 0 1 N N N N N N 92.931 88.546 102.018 -4.276 1.523  0.169  P1  F86 24 
F86 H1  H1  H 0 1 N N N N N N 93.236 90.465 100.226 -3.507 -1.277 0.603  H1  F86 25 
F86 H2  H2  H 0 1 N N N N N N 94.705 91.223 100.930 -2.395 -0.259 1.550  H2  F86 26 
F86 H3  H3  H 0 1 N N N N N N 92.836 94.317 103.841 0.903  -2.481 1.599  H3  F86 27 
F86 H4  H4  H 0 1 N N N N N N 92.634 92.703 100.320 -1.712 -1.533 -1.146 H4  F86 28 
F86 H5  H5  H 0 1 N N N N N N 91.546 95.796 102.597 0.725  -4.556 0.429  H5  F86 29 
F86 H6  H6  H 0 1 N N N N N N 91.942 90.585 104.157 2.728  -2.101 1.782  H6  F86 30 
F86 H7  H7  H 0 1 N N N N N N 93.064 87.211 103.511 -5.851 0.340  -0.786 H7  F86 31 
F86 H8  H8  H 0 1 N N N N N N 91.090 90.353 106.743 4.746  -0.385 2.156  H8  F86 32 
F86 H9  H9  H 0 1 N N N N N N 88.818 95.851 106.308 2.538  3.232  -2.048 H9  F86 33 
F86 H10 H10 H 0 1 N N N N N N 94.263 92.838 102.855 -1.403 -2.448 1.721  H10 F86 34 
F86 H11 H11 H 0 1 N N N N N N 89.168 92.707 109.319 6.088  3.081  0.798  H11 F86 35 
F86 H12 H12 H 0 1 N N N N N N 89.140 91.334 108.437 5.937  1.653  1.669  H12 F86 36 
F86 H13 H13 H 0 1 N N N N N N 94.897 94.765 101.708 -1.407 -4.525 0.540  H13 F86 37 
F86 O7  O7  O 0 1 N Y N N N N 91.484 88.827 101.139 -4.334 2.767  -0.851 O7  F86 38 
F86 H14 H14 H 0 1 N Y N N N N 91.559 88.443 100.273 -5.050 3.391  -0.669 H14 F86 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F86 C6  C4  SING N N 1  
F86 C6  O4  SING N N 2  
F86 O5  P1  DOUB N N 3  
F86 O3  C3  SING N N 4  
F86 C4  O1  SING N N 5  
F86 C4  C3  SING N N 6  
F86 N3  C8  TRIP N N 7  
F86 P1  O4  SING N N 8  
F86 P1  O6  SING N N 9  
F86 O1  C1  SING N N 10 
F86 C3  C2  SING N N 11 
F86 O2  C2  SING N N 12 
F86 C8  C1  SING N N 13 
F86 C2  C1  SING N N 14 
F86 C1  C5  SING N N 15 
F86 C5  C7  DOUB Y N 16 
F86 C5  N1  SING Y N 17 
F86 C7  C10 SING Y N 18 
F86 N2  N1  SING Y N 19 
F86 N2  C12 DOUB Y N 20 
F86 N1  C9  SING Y N 21 
F86 C10 C9  DOUB Y N 22 
F86 C9  C11 SING Y N 23 
F86 C12 N4  SING Y N 24 
F86 C11 N4  DOUB Y N 25 
F86 C11 N5  SING N N 26 
F86 C6  H1  SING N N 27 
F86 C6  H2  SING N N 28 
F86 C2  H3  SING N N 29 
F86 C4  H4  SING N N 30 
F86 O2  H5  SING N N 31 
F86 C7  H6  SING N N 32 
F86 O6  H7  SING N N 33 
F86 C10 H8  SING N N 34 
F86 C12 H9  SING N N 35 
F86 C3  H10 SING N N 36 
F86 N5  H11 SING N N 37 
F86 N5  H12 SING N N 38 
F86 O3  H13 SING N N 39 
F86 P1  O7  SING N N 40 
F86 O7  H14 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F86 SMILES           ACDLabs              12.01 "OP(=O)(O)OCC1OC(C#N)(C(O)C1O)c1ccc2c(N)ncnn21"                                                                                                                           
F86 InChI            InChI                1.06  "InChI=1S/C12H14N5O7P/c13-4-12(8-2-1-6-11(14)15-5-16-17(6)8)10(19)9(18)7(24-12)3-23-25(20,21)22/h1-2,5,7,9-10,18-19H,3H2,(H2,14,15,16)(H2,20,21,22)/t7-,9-,10-,12+/m1/s1" 
F86 InChIKey         InChI                1.06  ZBHOHJWLOOFLMW-LTGWCKQJSA-N                                                                                                                                               
F86 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)C#N"                                                                                                          
F86 SMILES           CACTVS               3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)C#N"                                                                                                                
F86 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C#N"                                                                                                      
F86 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)COP(=O)(O)O)O)O)C#N"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F86 "SYSTEMATIC NAME" ACDLabs              12.01 "{(2R,3S,4R,5R)-5-[(8R)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl dihydrogen phosphate (non-preferred name)" 
F86 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"          
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      F86 
_pdbx_chem_comp_synonyms.name         "Remdesivir, bound form" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F86 "Create component"         2020-04-14 PDBJ 
F86 "Initial release"          2020-04-22 RCSB 
F86 "Modify synonyms"          2020-10-05 RCSB 
F86 "Modify leaving atom flag" 2022-10-05 RCSB 
F86 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            F86 
_pdbx_chem_comp_pcm.modified_residue_id                ASN 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               N-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   N 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
