data_RN4
#

_chem_comp.id                                   RN4
_chem_comp.name                                 "(7S)-7-phenyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H30 N4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       438.652
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RN4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RN4  C10  C1   C  0  1  N  N  N  20.369  -11.297  42.802   -8.297  -1.834   0.501  C10  RN4   1  
RN4  C11  C2   C  0  1  N  N  N  20.030  -12.036  44.115   -9.777  -1.490   0.685  C11  RN4   2  
RN4  C12  C3   C  0  1  N  N  N  20.277  -11.297  45.337  -10.292  -0.783  -0.573  C12  RN4   3  
RN4  C14  C4   C  0  1  N  N  N  19.373   -9.413  43.940   -7.977   0.068  -0.966  C14  RN4   4  
RN4  C16  C5   C  0  1  Y  N  N  19.483  -10.935  35.361    1.021   1.542   0.068  C16  RN4   5  
RN4  C18  C6   C  0  1  Y  N  N  21.016  -12.761  34.746    2.709  -0.126  -0.004  C18  RN4   6  
RN4  C19  C7   C  0  1  Y  N  N  20.007  -12.877  33.741    3.488   0.956   0.005  C19  RN4   7  
RN4  C20  C8   C  0  1  N  N  N  19.996  -13.918  32.623    5.006   0.920  -0.026  C20  RN4   8  
RN4  C21  C9   C  0  1  N  N  S  21.054  -14.969  32.929    5.457  -0.472  -0.474  C21  RN4   9  
RN4  C23  C10  C  0  1  Y  N  N  21.653  -15.834  30.573    7.767  -0.870  -1.354  C23  RN4  10  
RN4  C25  C11  C  0  1  Y  N  N  20.834  -17.950  29.720    9.672  -0.872   0.097  C25  RN4  11  
RN4  C26  C12  C  0  1  Y  N  N  20.159  -18.128  30.917    8.851  -0.600   1.175  C26  RN4  12  
RN4  C29  C13  C  0  1  N  N  N  22.236  -13.706  34.768    3.251  -1.549  -0.042  C29  RN4  13  
RN4  N01  N1   N  0  1  N  N  N  22.688  -11.792  37.187    0.367  -2.081   0.025  N01  RN4  14  
RN4  C02  C14  C  0  1  Y  N  N  21.440  -11.169  36.794    0.172  -0.712   0.053  C02  RN4  15  
RN4  N03  N2   N  0  1  Y  N  N  20.976  -10.151  37.485   -1.051  -0.208   0.094  N03  RN4  16  
RN4  C04  C15  C  0  1  Y  N  N  19.847   -9.513  37.168   -1.251   1.105   0.120  C04  RN4  17  
RN4  S05  S1   S  0  1  N  N  N  19.386   -8.124  38.244   -2.903   1.716   0.175  S05  RN4  18  
RN4  C06  C16  C  0  1  N  N  N  20.379   -8.286  39.784   -3.816   0.154   0.174  C06  RN4  19  
RN4  C07  C17  C  0  1  N  N  N  19.568   -8.276  41.086   -5.319   0.441   0.219  C07  RN4  20  
RN4  C08  C18  C  0  1  N  N  N  19.323   -9.662  41.718   -6.091  -0.880   0.219  C08  RN4  21  
RN4  N09  N3   N  0  1  N  N  N  19.995   -9.894  42.724   -7.533  -0.604   0.262  N09  RN4  22  
RN4  C13  C19  C  0  1  N  N  N  20.086   -9.864  45.231   -9.448   0.469  -0.826  C13  RN4  23  
RN4  N15  N4   N  0  1  Y  N  N  19.098   -9.886  36.126   -0.250   1.965   0.108  N15  RN4  24  
RN4  C17  C20  C  0  1  Y  N  N  20.670  -11.600  35.682    1.282   0.174   0.038  C17  RN4  25  
RN4  C22  C21  C  0  1  Y  N  N  20.952  -15.997  31.768    6.945  -0.609  -0.273  C22  RN4  26  
RN4  C24  C22  C  0  1  Y  N  N  21.580  -16.795  29.556    9.131  -1.001  -1.169  C24  RN4  27  
RN4  C27  C23  C  0  1  Y  N  N  20.225  -17.169  31.933    7.487  -0.475   0.991  C27  RN4  28  
RN4  C28  C24  C  0  1  N  N  N  22.385  -14.324  33.350    4.727  -1.526   0.365  C28  RN4  29  
RN4  S30  S2   S  0  1  Y  N  N  18.814  -11.684  34.006    2.535   2.431   0.050  S30  RN4  30  
RN4  H1   H1   H  0  1  N  N  N  19.858  -11.824  41.982   -7.924  -2.325   1.400  H1   RN4  31  
RN4  H2   H2   H  0  1  N  N  N  21.457  -11.360  42.656   -8.184  -2.504  -0.352  H2   RN4  32  
RN4  H3   H3   H  0  1  N  N  N  18.962  -12.298  44.089  -10.347  -2.405   0.846  H3   RN4  33  
RN4  H4   H4   H  0  1  N  N  N  20.632  -12.956  44.150   -9.894  -0.831   1.545  H4   RN4  34  
RN4  H5   H5   H  0  1  N  N  N  19.593  -11.677  46.111  -10.212  -1.456  -1.427  H5   RN4  35  
RN4  H6   H6   H  0  1  N  N  N  21.317  -11.482  45.644  -11.334  -0.498  -0.430  H6   RN4  36  
RN4  H7   H7   H  0  1  N  N  N  19.368   -8.313  43.914   -7.372   0.959  -1.133  H7   RN4  37  
RN4  H8   H8   H  0  1  N  N  N  18.338   -9.784  43.969   -7.865  -0.611  -1.812  H8   RN4  38  
RN4  H9   H9   H  0  1  N  N  N  20.223  -13.433  31.662    5.375   1.667  -0.729  H9   RN4  39  
RN4  H10  H10  H  0  1  N  N  N  19.006  -14.394  32.569    5.397   1.127   0.970  H10  RN4  40  
RN4  H11  H11  H  0  1  N  N  N  20.692  -15.502  33.821    5.215  -0.613  -1.528  H11  RN4  41  
RN4  H12  H12  H  0  1  N  N  N  22.261  -14.953  30.430    7.344  -0.975  -2.342  H12  RN4  42  
RN4  H13  H13  H  0  1  N  N  N  20.780  -18.692  28.937   10.738  -0.970   0.241  H13  RN4  43  
RN4  H14  H14  H  0  1  N  N  N  19.572  -19.022  31.068    9.275  -0.487   2.162  H14  RN4  44  
RN4  H15  H15  H  0  1  N  N  N  22.078  -14.504  35.509    2.695  -2.170   0.660  H15  RN4  45  
RN4  H16  H16  H  0  1  N  N  N  23.143  -13.140  35.026    3.147  -1.952  -1.050  H16  RN4  46  
RN4  H17  H17  H  0  1  N  N  N  23.054  -11.326  37.993   -0.380  -2.680   0.180  H17  RN4  47  
RN4  H18  H18  H  0  1  N  N  N  22.526  -12.755  37.403    1.250  -2.442  -0.149  H18  RN4  48  
RN4  H19  H19  H  0  1  N  N  N  20.932   -9.236  39.734   -3.580  -0.405  -0.732  H19  RN4  49  
RN4  H20  H20  H  0  1  N  N  N  21.091   -7.448  39.820   -3.533  -0.434   1.048  H20  RN4  50  
RN4  H21  H21  H  0  1  N  N  N  20.108   -7.659  41.819   -5.555   1.000   1.125  H21  RN4  51  
RN4  H22  H22  H  0  1  N  N  N  18.589   -7.821  40.874   -5.602   1.028  -0.654  H22  RN4  52  
RN4  H23  H23  H  0  1  N  N  N  18.260   -9.731  41.992   -5.855  -1.438  -0.687  H23  RN4  53  
RN4  H24  H24  H  0  1  N  N  N  19.557  -10.429  40.965   -5.807  -1.467   1.092  H24  RN4  54  
RN4  H26  H26  H  0  1  N  N  N  21.074   -9.381  45.266   -9.782   0.953  -1.744  H26  RN4  55  
RN4  H27  H27  H  0  1  N  N  N  19.485   -9.532  46.090   -9.559   1.158   0.011  H27  RN4  56  
RN4  H28  H28  H  0  1  N  N  N  22.113  -16.633  28.631    9.773  -1.204  -2.013  H28  RN4  57  
RN4  H29  H29  H  0  1  N  N  N  19.702  -17.343  32.862    6.845  -0.262   1.834  H29  RN4  58  
RN4  H30  H30  H  0  1  N  N  N  23.175  -15.090  33.365    5.169  -2.506   0.184  H30  RN4  59  
RN4  H31  H31  H  0  1  N  N  N  22.653  -13.535  32.632    4.815  -1.275   1.422  H31  RN4  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RN4  C24  C25  DOUB  Y  N   1  
RN4  C24  C23  SING  Y  N   2  
RN4  C25  C26  SING  Y  N   3  
RN4  C23  C22  DOUB  Y  N   4  
RN4  C26  C27  DOUB  Y  N   5  
RN4  C22  C27  SING  Y  N   6  
RN4  C22  C21  SING  N  N   7  
RN4  C20  C21  SING  N  N   8  
RN4  C20  C19  SING  N  N   9  
RN4  C21  C28  SING  N  N  10  
RN4  C28  C29  SING  N  N  11  
RN4  C19  S30  SING  Y  N  12  
RN4  C19  C18  DOUB  Y  N  13  
RN4  S30  C16  SING  Y  N  14  
RN4  C18  C29  SING  N  N  15  
RN4  C18  C17  SING  Y  N  16  
RN4  C16  C17  DOUB  Y  N  17  
RN4  C16  N15  SING  Y  N  18  
RN4  C17  C02  SING  Y  N  19  
RN4  N15  C04  DOUB  Y  N  20  
RN4  C02  N01  SING  N  N  21  
RN4  C02  N03  DOUB  Y  N  22  
RN4  C04  N03  SING  Y  N  23  
RN4  C04  S05  SING  N  N  24  
RN4  S05  C06  SING  N  N  25  
RN4  C06  C07  SING  N  N  26  
RN4  C07  C08  SING  N  N  27  
RN4  C08  N09  SING  N  N  28  
RN4  N09  C10  SING  N  N  29  
RN4  N09  C14  SING  N  N  30  
RN4  C10  C11  SING  N  N  31  
RN4  C14  C13  SING  N  N  32  
RN4  C11  C12  SING  N  N  33  
RN4  C13  C12  SING  N  N  34  
RN4  C10  H1   SING  N  N  35  
RN4  C10  H2   SING  N  N  36  
RN4  C11  H3   SING  N  N  37  
RN4  C11  H4   SING  N  N  38  
RN4  C12  H5   SING  N  N  39  
RN4  C12  H6   SING  N  N  40  
RN4  C14  H7   SING  N  N  41  
RN4  C14  H8   SING  N  N  42  
RN4  C20  H9   SING  N  N  43  
RN4  C20  H10  SING  N  N  44  
RN4  C21  H11  SING  N  N  45  
RN4  C23  H12  SING  N  N  46  
RN4  C25  H13  SING  N  N  47  
RN4  C26  H14  SING  N  N  48  
RN4  C29  H15  SING  N  N  49  
RN4  C29  H16  SING  N  N  50  
RN4  N01  H17  SING  N  N  51  
RN4  N01  H18  SING  N  N  52  
RN4  C06  H19  SING  N  N  53  
RN4  C06  H20  SING  N  N  54  
RN4  C07  H21  SING  N  N  55  
RN4  C07  H22  SING  N  N  56  
RN4  C08  H23  SING  N  N  57  
RN4  C08  H24  SING  N  N  58  
RN4  C13  H26  SING  N  N  59  
RN4  C13  H27  SING  N  N  60  
RN4  C24  H28  SING  N  N  61  
RN4  C27  H29  SING  N  N  62  
RN4  C28  H30  SING  N  N  63  
RN4  C28  H31  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RN4  SMILES            ACDLabs               12.01  "C1CCCCN1CCCSc2nc(N)c5c(n2)sc3c5CCC(C3)c4ccccc4"  
RN4  InChI             InChI                 1.03   "InChI=1S/C24H30N4S2/c25-22-21-19-11-10-18(17-8-3-1-4-9-17)16-20(19)30-23(21)27-24(26-22)29-15-7-14-28-12-5-2-6-13-28/h1,3-4,8-9,18H,2,5-7,10-16H2,(H2,25,26,27)/t18-/m0/s1"  
RN4  InChIKey          InChI                 1.03   IMHDFRLOCDDLHN-SFHVURJKSA-N  
RN4  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(SCCCN2CCCCC2)nc3sc4C[C@H](CCc4c13)c5ccccc5"  
RN4  SMILES            CACTVS                3.385  "Nc1nc(SCCCN2CCCCC2)nc3sc4C[CH](CCc4c13)c5ccccc5"  
RN4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)[C@H]2CCc3c(sc4c3c(nc(n4)SCCCN5CCCCC5)N)C2"  
RN4  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C2CCc3c(sc4c3c(nc(n4)SCCCN5CCCCC5)N)C2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RN4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(7S)-7-phenyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-amine"  
RN4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(7~{S})-7-phenyl-2-(3-piperidin-1-ylpropylsulfanyl)-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RN4  "Create component"  2020-02-17  RCSB  
RN4  "Initial release"   2020-06-03  RCSB  
##
