data_WC3
# 
_chem_comp.id                                    WC3 
_chem_comp.name                                  "2-[2-(3,5-dimethylpyrazol-1-yl)-6-(4-methoxyphenyl)pyrimidin-4-yl]oxy-N-methyl-N-[(2-methylpyridin-3-yl)methyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H28 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-10 
_chem_comp.pdbx_modified_date                    2024-08-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        472.539 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WC3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P0I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WC3 C13  C1  C 0 1 N N N N N N 29.201 33.914 6.073  -1.768 0.221  -0.703 C13  WC3 1  
WC3 C15  C2  C 0 1 Y N N N N N 27.020 34.171 7.070  0.547  -0.208 -0.399 C15  WC3 2  
WC3 C17  C3  C 0 1 Y N N N N N 26.667 34.396 9.409  2.902  -0.487 -0.083 C17  WC3 3  
WC3 C20  C4  C 0 1 Y N N N N N 28.712 33.645 12.592 6.475  -1.567 0.349  C20  WC3 4  
WC3 C21  C5  C 0 1 Y N N N N N 27.628 33.454 13.485 6.357  -2.946 0.233  C21  WC3 5  
WC3 C24  C6  C 0 1 Y N N N N N 26.296 33.591 13.062 5.114  -3.523 0.009  C24  WC3 6  
WC3 C02  C7  C 0 1 N N N N N N 29.609 32.448 6.032  -3.058 -0.519 -0.947 C02  WC3 7  
WC3 C04  C8  C 0 1 N N N N N N 31.297 32.373 8.047  -4.218 1.624  -0.954 C04  WC3 8  
WC3 C05  C9  C 0 1 N N N N N N 30.680 30.286 6.822  -5.469 -0.557 -1.301 C05  WC3 9  
WC3 C06  C10 C 0 1 Y N N N N N 31.918 29.832 6.083  -6.154 -0.818 0.016  C06  WC3 10 
WC3 C07  C11 C 0 1 Y N N N N N 32.769 30.742 5.448  -5.633 -0.304 1.193  C07  WC3 11 
WC3 C08  C12 C 0 1 Y N N N N N 33.886 30.238 4.786  -6.297 -0.570 2.381  C08  WC3 12 
WC3 C09  C13 C 0 1 Y N N N N N 34.088 28.864 4.799  -7.449 -1.333 2.351  C09  WC3 13 
WC3 C11  C14 C 0 1 Y N N N N N 32.184 28.469 6.054  -7.314 -1.568 0.064  C11  WC3 14 
WC3 C12  C15 C 0 1 N N N N N N 31.248 27.449 6.744  -7.894 -2.126 -1.211 C12  WC3 15 
WC3 C16  C16 C 0 1 Y N N N N N 27.278 33.740 8.370  1.648  -1.054 -0.302 C16  WC3 16 
WC3 C18  C17 C 0 1 Y N N N N N 27.008 34.016 10.852 4.107  -1.344 0.027  C18  WC3 17 
WC3 C19  C18 C 0 1 Y N N N N N 28.376 33.956 11.262 5.357  -0.767 0.247  C19  WC3 18 
WC3 C23  C19 C 0 1 N N N N N N 27.022 32.004 15.313 7.266  -5.142 0.210  C23  WC3 19 
WC3 C25  C20 C 0 1 Y N N N N N 25.978 33.898 11.760 3.993  -2.728 -0.099 C25  WC3 20 
WC3 C27  C21 C 0 1 Y N N N N N 25.560 35.757 7.932  1.933  1.607  -0.071 C27  WC3 21 
WC3 C29  C22 C 0 1 Y N N N N N 23.253 36.282 8.371  1.080  3.909  -0.027 C29  WC3 22 
WC3 C30  C23 C 0 1 N N N N N N 22.784 35.072 9.224  -0.381 3.621  -0.256 C30  WC3 23 
WC3 C31  C24 C 0 1 Y N N N N N 22.305 37.220 8.096  1.636  5.130  0.145  C31  WC3 24 
WC3 C32  C25 C 0 1 Y N N N N N 22.896 38.183 7.315  3.013  4.957  0.326  C32  WC3 25 
WC3 C33  C26 C 0 1 N N N N N N 22.232 39.455 6.782  4.018  6.056  0.553  C33  WC3 26 
WC3 N03  N1  N 0 1 N N N N N N 30.537 31.733 6.972  -4.215 0.163  -1.064 N03  WC3 27 
WC3 N10  N2  N 0 1 Y N N N N N 33.252 28.044 5.416  -7.916 -1.806 1.212  N10  WC3 28 
WC3 N26  N3  N 0 1 Y N N N N N 25.826 35.346 9.155  3.003  0.838  0.026  N26  WC3 29 
WC3 N28  N4  N 0 1 Y N N N N N 24.442 36.680 7.829  2.078  2.990  0.049  N28  WC3 30 
WC3 N34  N5  N 0 1 Y N N N N N 24.172 37.817 7.112  3.279  3.678  0.266  N34  WC3 31 
WC3 N35  N6  N 0 1 Y N N N N N 26.138 35.156 6.881  0.727  1.103  -0.279 N35  WC3 32 
WC3 O01  O1  O 0 1 N N N N N N 28.958 31.919 5.162  -3.055 -1.728 -1.038 O01  WC3 33 
WC3 O14  O2  O 0 1 N N N N N N 27.774 33.571 6.028  -0.691 -0.714 -0.617 O14  WC3 34 
WC3 O22  O3  O 0 1 N N N N N N 27.776 33.127 14.860 7.460  -3.732 0.339  O22  WC3 35 
WC3 H131 H1  H 0 0 N N N N N N 29.544 34.492 5.202  -1.585 0.912  -1.526 H131 WC3 36 
WC3 H132 H2  H 0 0 N N N N N N 29.502 34.430 6.997  -1.840 0.779  0.230  H132 WC3 37 
WC3 H201 H3  H 0 0 N N N N N N 29.739 33.557 12.915 7.443  -1.122 0.523  H201 WC3 38 
WC3 H241 H4  H 0 0 N N N N N N 25.500 33.451 13.779 5.025  -4.596 -0.081 H241 WC3 39 
WC3 H043 H5  H 0 0 N N N N N N 31.893 31.615 8.577  -3.976 2.062  -1.923 H043 WC3 40 
WC3 H041 H6  H 0 0 N N N N N N 31.967 33.134 7.620  -5.205 1.962  -0.639 H041 WC3 41 
WC3 H042 H7  H 0 0 N N N N N N 30.602 32.851 8.753  -3.475 1.935  -0.219 H042 WC3 42 
WC3 H052 H8  H 0 0 N N N N N N 29.802 29.913 6.275  -5.255 -1.505 -1.794 H052 WC3 43 
WC3 H051 H9  H 0 0 N N N N N N 30.702 29.841 7.828  -6.118 0.045  -1.936 H051 WC3 44 
WC3 H071 H10 H 0 0 N N N N N N 32.566 31.803 5.470  -4.730 0.289  1.185  H071 WC3 45 
WC3 H081 H11 H 0 0 N N N N N N 34.575 30.896 4.278  -5.919 -0.186 3.316  H081 WC3 46 
WC3 H091 H12 H 0 0 N N N N N N 34.949 28.454 4.293  -7.972 -1.545 3.272  H091 WC3 47 
WC3 H121 H13 H 0 0 N N N N N N 31.638 26.432 6.592  -7.408 -3.073 -1.446 H121 WC3 48 
WC3 H123 H14 H 0 0 N N N N N N 31.200 27.666 7.821  -8.964 -2.289 -1.082 H123 WC3 49 
WC3 H122 H15 H 0 0 N N N N N N 30.240 27.524 6.309  -7.728 -1.420 -2.024 H122 WC3 50 
WC3 H161 H16 H 0 0 N N N N N N 27.943 32.909 8.555  1.533  -2.124 -0.395 H161 WC3 51 
WC3 H191 H17 H 0 0 N N N N N N 29.159 34.151 10.544 5.448  0.304  0.345  H191 WC3 52 
WC3 H233 H18 H 0 0 N N N N N N 27.211 31.843 16.385 6.585  -5.488 0.987  H233 WC3 53 
WC3 H232 H19 H 0 0 N N N N N N 25.950 32.194 15.155 6.842  -5.363 -0.770 H232 WC3 54 
WC3 H231 H20 H 0 0 N N N N N N 27.323 31.109 14.749 8.224  -5.651 0.314  H231 WC3 55 
WC3 H251 H21 H 0 0 N N N N N N 24.951 34.042 11.458 3.026  -3.178 -0.269 H251 WC3 56 
WC3 H302 H22 H 0 0 N N N N N N 22.916 35.302 10.292 -0.590 3.628  -1.326 H302 WC3 57 
WC3 H301 H23 H 0 0 N N N N N N 21.722 34.870 9.021  -0.627 2.641  0.155  H301 WC3 58 
WC3 H303 H24 H 0 0 N N N N N N 23.382 34.186 8.963  -0.984 4.383  0.237  H303 WC3 59 
WC3 H311 H25 H 0 0 N N N N N N 21.278 37.209 8.430  1.109  6.073  0.142  H311 WC3 60 
WC3 H331 H26 H 0 0 N N N N N N 22.963 40.035 6.200  4.117  6.244  1.622  H331 WC3 61 
WC3 H333 H27 H 0 0 N N N N N N 21.383 39.183 6.138  4.984  5.756  0.147  H333 WC3 62 
WC3 H332 H28 H 0 0 N N N N N N 21.872 40.062 7.626  3.681  6.965  0.055  H332 WC3 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WC3 C08 C09  DOUB Y N 1  
WC3 C08 C07  SING Y N 2  
WC3 C09 N10  SING Y N 3  
WC3 O01 C02  DOUB N N 4  
WC3 N10 C11  DOUB Y N 5  
WC3 C07 C06  DOUB Y N 6  
WC3 O14 C13  SING N N 7  
WC3 O14 C15  SING N N 8  
WC3 C02 C13  SING N N 9  
WC3 C02 N03  SING N N 10 
WC3 C11 C06  SING Y N 11 
WC3 C11 C12  SING N N 12 
WC3 C06 C05  SING N N 13 
WC3 C33 C32  SING N N 14 
WC3 C05 N03  SING N N 15 
WC3 N35 C15  DOUB Y N 16 
WC3 N35 C27  SING Y N 17 
WC3 N03 C04  SING N N 18 
WC3 C15 C16  SING Y N 19 
WC3 N34 C32  DOUB Y N 20 
WC3 N34 N28  SING Y N 21 
WC3 C32 C31  SING Y N 22 
WC3 N28 C27  SING N N 23 
WC3 N28 C29  SING Y N 24 
WC3 C27 N26  DOUB Y N 25 
WC3 C31 C29  DOUB Y N 26 
WC3 C16 C17  DOUB Y N 27 
WC3 C29 C30  SING N N 28 
WC3 N26 C17  SING Y N 29 
WC3 C17 C18  SING N N 30 
WC3 C18 C19  DOUB Y N 31 
WC3 C18 C25  SING Y N 32 
WC3 C19 C20  SING Y N 33 
WC3 C25 C24  DOUB Y N 34 
WC3 C20 C21  DOUB Y N 35 
WC3 C24 C21  SING Y N 36 
WC3 C21 O22  SING N N 37 
WC3 O22 C23  SING N N 38 
WC3 C13 H131 SING N N 39 
WC3 C13 H132 SING N N 40 
WC3 C20 H201 SING N N 41 
WC3 C24 H241 SING N N 42 
WC3 C04 H043 SING N N 43 
WC3 C04 H041 SING N N 44 
WC3 C04 H042 SING N N 45 
WC3 C05 H052 SING N N 46 
WC3 C05 H051 SING N N 47 
WC3 C07 H071 SING N N 48 
WC3 C08 H081 SING N N 49 
WC3 C09 H091 SING N N 50 
WC3 C12 H121 SING N N 51 
WC3 C12 H123 SING N N 52 
WC3 C12 H122 SING N N 53 
WC3 C16 H161 SING N N 54 
WC3 C19 H191 SING N N 55 
WC3 C23 H233 SING N N 56 
WC3 C23 H232 SING N N 57 
WC3 C23 H231 SING N N 58 
WC3 C25 H251 SING N N 59 
WC3 C30 H302 SING N N 60 
WC3 C30 H301 SING N N 61 
WC3 C30 H303 SING N N 62 
WC3 C31 H311 SING N N 63 
WC3 C33 H331 SING N N 64 
WC3 C33 H333 SING N N 65 
WC3 C33 H332 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WC3 InChI            InChI                1.06  "InChI=1S/C26H28N6O3/c1-17-13-18(2)32(30-17)26-28-23(20-8-10-22(34-5)11-9-20)14-24(29-26)35-16-25(33)31(4)15-21-7-6-12-27-19(21)3/h6-14H,15-16H2,1-5H3" 
WC3 InChIKey         InChI                1.06  VJEOBRGFUNEYOH-UHFFFAOYSA-N                                                                                                                             
WC3 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(cc1)c2cc(OCC(=O)N(C)Cc3cccnc3C)nc(n2)n4nc(C)cc4C"                                                                                              
WC3 SMILES           CACTVS               3.385 "COc1ccc(cc1)c2cc(OCC(=O)N(C)Cc3cccnc3C)nc(n2)n4nc(C)cc4C"                                                                                              
WC3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(n(n1)c2nc(cc(n2)OCC(=O)N(C)Cc3cccnc3C)c4ccc(cc4)OC)C"                                                                                            
WC3 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(n(n1)c2nc(cc(n2)OCC(=O)N(C)Cc3cccnc3C)c4ccc(cc4)OC)C"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           WC3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[2-(3,5-dimethylpyrazol-1-yl)-6-(4-methoxyphenyl)pyrimidin-4-yl]oxy-~{N}-methyl-~{N}-[(2-methylpyridin-3-yl)methyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WC3 "Create component" 2023-05-10 PDBE 
WC3 "Initial release"  2024-09-04 RCSB 
# 
