data_PM3
# 
_chem_comp.id                                    PM3 
_chem_comp.name                                  "2-AMINO-3-(4-PHOSPHONOMETHYL-PHENYL)-PROPIONIC ACID" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H14 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               PHE 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-05-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        259.196 
_chem_comp.one_letter_code                       F 
_chem_comp.three_letter_code                     PM3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2GV2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PM3 N    N    N 0 1 N N N Y Y N 13.515 18.502 13.614 3.477  1.441  0.809  N    PM3 1  
PM3 CA   CA   C 0 1 N N S Y N N 12.331 18.317 14.445 3.610  0.041  0.383  CA   PM3 2  
PM3 CB   CB   C 0 1 N N N N N N 11.615 19.654 14.660 2.627  -0.242 -0.754 CB   PM3 3  
PM3 CG   CG   C 0 1 Y N N N N N 12.332 20.621 15.568 1.216  -0.114 -0.242 CG   PM3 4  
PM3 CD1  CD1  C 0 1 Y N N N N N 12.657 21.905 15.132 0.566  -1.218 0.277  CD1  PM3 5  
PM3 CE1  CE1  C 0 1 Y N N N N N 13.270 22.819 15.986 -0.727 -1.100 0.751  CE1  PM3 6  
PM3 CD2  CD2  C 0 1 Y N N N N N 12.641 20.270 16.878 0.569  1.106  -0.297 CD2  PM3 7  
PM3 CE2  CE2  C 0 1 Y N N N N N 13.256 21.171 17.738 -0.726 1.224  0.173  CE2  PM3 8  
PM3 CZ   CZ   C 0 1 Y N N N N N 13.565 22.442 17.288 -1.374 0.121  0.698  CZ   PM3 9  
PM3 CH4  CH4  C 0 1 N N N N N N 14.234 23.420 18.222 -2.785 0.249  1.210  CH4  PM3 10 
PM3 P    P    P 0 1 N N N N N N 16.011 23.505 18.208 -3.957 -0.087 -0.145 P    PM3 11 
PM3 O1   O1   O 0 1 N N N N N N 16.476 22.129 18.520 -5.460 -0.079 0.431  O1   PM3 12 
PM3 O2   O2   O 0 1 N N N N N N 16.353 23.943 16.833 -3.662 -1.412 -0.735 O2   PM3 13 
PM3 O3   O3   O 0 1 N N N N N N 16.374 24.498 19.246 -3.810 1.049  -1.276 O3   PM3 14 
PM3 C    C    C 0 1 N N N Y N Y 11.352 17.357 13.780 5.018  -0.207 -0.096 C    PM3 15 
PM3 OXT  OXT  O 0 1 N Y N Y N Y 10.818 16.447 14.410 5.497  -1.459 -0.153 OXT  PM3 16 
PM3 O    O    O 0 1 N N N Y N Y 11.114 17.586 12.495 5.715  0.722  -0.428 O    PM3 17 
PM3 H    H    H 0 1 N N N Y Y N 13.972 19.354 13.870 3.687  2.010  0.003  H    PM3 18 
PM3 H2   H2   H 0 1 N Y N Y Y N 13.244 18.544 12.652 2.502  1.588  1.021  H2   PM3 19 
PM3 HA   HA   H 0 1 N N N Y N N 12.663 17.905 15.409 3.392  -0.617 1.225  HA   PM3 20 
PM3 HB2  HB2  H 0 1 N N N N N N 10.658 19.419 15.149 2.788  0.474  -1.560 HB2  PM3 21 
PM3 HB3  HB3  H 0 1 N N N N N N 11.506 20.136 13.677 2.787  -1.253 -1.129 HB3  PM3 22 
PM3 HD1  HD1  H 0 1 N N N N N N 12.430 22.195 14.117 1.071  -2.172 0.319  HD1  PM3 23 
PM3 HE1  HE1  H 0 1 N N N N N N 13.513 23.812 15.638 -1.234 -1.961 1.160  HE1  PM3 24 
PM3 HD2  HD2  H 0 1 N N N N N N 12.398 19.279 17.233 1.075  1.968  -0.706 HD2  PM3 25 
PM3 HE2  HE2  H 0 1 N N N N N N 13.491 20.881 18.751 -1.231 2.178  0.131  HE2  PM3 26 
PM3 HH42 HH42 H 0 0 N N N N N N 13.978 23.064 19.231 -2.945 -0.467 2.016  HH42 PM3 27 
PM3 HH43 HH43 H 0 0 N N N N N N 13.867 24.420 17.949 -2.944 1.260  1.586  HH43 PM3 28 
PM3 HO1  HO1  H 0 1 N N N N N N 16.575 21.637 17.713 -6.047 -0.261 -0.316 HO1  PM3 29 
PM3 HO3  HO3  H 0 1 N N N N N N 16.452 24.063 20.087 -4.010 1.894  -0.851 HO3  PM3 30 
PM3 HXT  HO   H 0 1 N Y N Y N Y 10.235 15.964 13.837 6.400  -1.618 -0.460 HO   PM3 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PM3 N   CA   SING N N 1  
PM3 N   H    SING N N 2  
PM3 N   H2   SING N N 3  
PM3 CA  CB   SING N N 4  
PM3 CA  C    SING N N 5  
PM3 CA  HA   SING N N 6  
PM3 CB  CG   SING N N 7  
PM3 CB  HB2  SING N N 8  
PM3 CB  HB3  SING N N 9  
PM3 CG  CD1  SING Y N 10 
PM3 CG  CD2  DOUB Y N 11 
PM3 CD1 CE1  DOUB Y N 12 
PM3 CD1 HD1  SING N N 13 
PM3 CE1 CZ   SING Y N 14 
PM3 CE1 HE1  SING N N 15 
PM3 CD2 CE2  SING Y N 16 
PM3 CD2 HD2  SING N N 17 
PM3 CE2 CZ   DOUB Y N 18 
PM3 CE2 HE2  SING N N 19 
PM3 CZ  CH4  SING N N 20 
PM3 CH4 P    SING N N 21 
PM3 CH4 HH42 SING N N 22 
PM3 CH4 HH43 SING N N 23 
PM3 P   O1   SING N N 24 
PM3 P   O2   DOUB N N 25 
PM3 P   O3   SING N N 26 
PM3 O1  HO1  SING N N 27 
PM3 O3  HO3  SING N N 28 
PM3 C   OXT  SING N N 29 
PM3 C   O    DOUB N N 30 
PM3 OXT HXT  SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PM3 SMILES           ACDLabs              10.04 "O=C(O)C(N)Cc1ccc(cc1)CP(=O)(O)O"                                                                                    
PM3 SMILES_CANONICAL CACTVS               3.341 "N[C@@H](Cc1ccc(C[P](O)(O)=O)cc1)C(O)=O"                                                                             
PM3 SMILES           CACTVS               3.341 "N[CH](Cc1ccc(C[P](O)(O)=O)cc1)C(O)=O"                                                                               
PM3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[C@@H](C(=O)O)N)CP(=O)(O)O"                                                                               
PM3 SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CC(C(=O)O)N)CP(=O)(O)O"                                                                                    
PM3 InChI            InChI                1.03  "InChI=1S/C10H14NO5P/c11-9(10(12)13)5-7-1-3-8(4-2-7)6-17(14,15)16/h1-4,9H,5-6,11H2,(H,12,13)(H2,14,15,16)/t9-/m0/s1" 
PM3 InChIKey         InChI                1.03  SAQLLHDEEMZENJ-VIFPVBQESA-N                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PM3 "SYSTEMATIC NAME" ACDLabs              10.04 "4-(phosphonomethyl)-L-phenylalanine"                      
PM3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-[4-(phosphonomethyl)phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PM3 "Create component"  2006-05-03 RCSB 
PM3 "Modify descriptor" 2011-06-04 RCSB 
PM3 "Modify backbone"   2023-11-03 PDBE 
PM3 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PM3 
_pdbx_chem_comp_pcm.modified_residue_id                PHE 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
