data_MY3
# 
_chem_comp.id                                    MY3 
_chem_comp.name                                  "[N-(3-BENZYLCARBAMOYL-OXIRANECARBONYL)-HYDRAZINO] - ACETIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-05-22 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        295.291 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MY3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MY3 C1   C1   C 0 1 Y N N N N N 36.757 39.900 33.356 -4.282 0.022  0.215  C1   MY3 1  
MY3 C2   C2   C 0 1 Y N N N N N 35.741 40.786 33.876 -4.388 -1.072 1.053  C2   MY3 2  
MY3 N    N20  N 0 1 N N N Y Y N 36.106 32.359 30.293 2.503  -1.905 1.015  N20  MY3 3  
MY3 C3   C3   C 0 1 Y N N N N N 35.534 42.087 33.274 -5.247 -2.107 0.733  C3   MY3 4  
MY3 C4   C4   C 0 1 Y N N N N N 36.346 42.506 32.147 -6.000 -2.048 -0.425 C4   MY3 5  
MY3 C5   C5   C 0 1 Y N N N N N 37.363 41.623 31.625 -5.894 -0.953 -1.263 C5   MY3 6  
MY3 C6   C6   C 0 1 Y N N N N N 37.568 40.325 32.227 -5.035 0.081  -0.943 C6   MY3 7  
MY3 C7   C7   C 0 1 N N N N N N 36.981 38.514 33.991 -3.351 1.154  0.567  C7   MY3 8  
MY3 C9   C9   C 0 1 N N S N N N 34.822 35.933 32.147 0.333  1.510  -0.412 C9   MY3 9  
MY3 C10  C10  C 0 1 N N N N N N 35.453 34.534 32.017 0.939  0.268  0.244  C10  MY3 10 
MY3 C    C11  C 0 1 N N N Y N Y 34.503 33.360 31.829 2.243  -0.070 -0.430 C11  MY3 11 
MY3 C15  C15  C 0 1 N N N N N N 35.930 36.925 32.361 -1.028 1.777  0.179  C15  MY3 12 
MY3 C12  C12  C 0 1 N N N N N N 33.920 31.170 30.895 4.227  -1.463 -0.672 C12  MY3 13 
MY3 C13  C13  C 0 1 N N N N N N 33.502 30.767 29.532 5.355  -0.750 0.028  C13  MY3 14 
MY3 N2   N2   N 0 1 N N N Y N N 34.847 32.324 31.004 2.960  -1.134 -0.016 N2   MY3 15 
MY3 N3   N3   N 0 1 N N N N N N 35.956 37.525 33.601 -2.029 0.894  -0.008 N3   MY3 16 
MY3 O4   O4   O 0 1 N N N N N N 36.749 37.152 31.463 -1.222 2.787  0.822  O4   MY3 17 
MY3 O    O6   O 0 1 N N N Y N Y 33.461 33.371 32.476 2.648  0.614  -1.346 O6   MY3 18 
MY3 O7   O7   O 0 1 N N N N N N 33.355 31.653 28.659 5.124  -0.039 0.977  O7   MY3 19 
MY3 O8   O8   O 0 1 N N N N N N 33.296 29.535 29.343 6.617  -0.904 -0.404 O8   MY3 20 
MY3 O57  O57  O 0 1 N N N N N N 34.138 36.263 30.933 1.182  2.635  -0.178 O57  MY3 21 
MY3 H20  H2   H 0 1 N N N N N N 35.135 40.478 34.715 -3.800 -1.118 1.957  H2   MY3 22 
MY3 H    H201 H 0 0 N N N Y Y N 36.200 31.532 29.739 3.143  -2.661 1.211  H201 MY3 23 
MY3 H2   H202 H 0 0 N Y N Y Y N 36.130 33.162 29.698 2.340  -1.347 1.839  H202 MY3 24 
MY3 H3   H3   H 0 1 N N N N N N 34.773 42.747 33.665 -5.329 -2.962 1.387  H3   MY3 25 
MY3 H4   H4   H 0 1 N N N N N N 36.190 43.476 31.699 -6.670 -2.857 -0.675 H4   MY3 26 
MY3 H5   H5   H 0 1 N N N N N N 37.969 41.932 30.786 -6.482 -0.907 -2.168 H5   MY3 27 
MY3 H6   H6   H 0 1 N N N N N N 38.329 39.666 31.835 -4.952 0.936  -1.598 H6   MY3 28 
MY3 H7C1 H7C1 H 0 0 N N N N N N 37.963 38.140 33.665 -3.745 2.087  0.164  H7C1 MY3 29 
MY3 H7C2 H7C2 H 0 0 N N N N N N 36.953 38.627 35.085 -3.268 1.232  1.651  H7C2 MY3 30 
MY3 H9   H9   H 0 1 N N N N N N 34.111 35.952 32.986 0.237  1.344  -1.485 H9   MY3 31 
MY3 H101 H101 H 0 0 N N N N N N 36.112 34.559 31.137 1.117  0.466  1.301  H101 MY3 32 
MY3 H102 H102 H 0 0 N Y N N N N 36.016 34.347 32.944 0.249  -0.570 0.143  H102 MY3 33 
MY3 H121 H121 H 0 0 N N N N N N 33.006 31.438 31.446 4.190  -1.148 -1.715 H121 MY3 34 
MY3 H122 H122 H 0 0 N N N N N N 34.429 30.305 31.344 4.393  -2.540 -0.623 H122 MY3 35 
MY3 HN3  HA   H 0 1 N N N N N N 35.250 37.280 34.266 -1.873 0.087  -0.522 HA   MY3 36 
MY3 H8   H8   H 0 1 N N N N N N 33.016 29.394 28.446 7.307  -0.426 0.077  H8   MY3 37 
MY3 H57  H57  H 0 1 N N N N N N 34.701 36.800 30.388 1.313  2.842  0.757  H57  MY3 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MY3 C1  C2   SING Y N 1  
MY3 C1  C6   DOUB Y N 2  
MY3 C1  C7   SING N N 3  
MY3 C2  C3   DOUB Y N 4  
MY3 C2  H20  SING N N 5  
MY3 N   N2   SING N N 6  
MY3 N   H    SING N N 7  
MY3 N   H2   SING N N 8  
MY3 C3  C4   SING Y N 9  
MY3 C3  H3   SING N N 10 
MY3 C4  C5   DOUB Y N 11 
MY3 C4  H4   SING N N 12 
MY3 C5  C6   SING Y N 13 
MY3 C5  H5   SING N N 14 
MY3 C6  H6   SING N N 15 
MY3 C7  N3   SING N N 16 
MY3 C7  H7C1 SING N N 17 
MY3 C7  H7C2 SING N N 18 
MY3 C9  C10  SING N N 19 
MY3 C9  C15  SING N N 20 
MY3 C9  O57  SING N N 21 
MY3 C9  H9   SING N N 22 
MY3 C10 C    SING N N 23 
MY3 C10 H101 SING N N 24 
MY3 C10 H102 SING N N 25 
MY3 C   N2   SING N N 26 
MY3 C   O    DOUB N N 27 
MY3 C15 N3   SING N N 28 
MY3 C15 O4   DOUB N N 29 
MY3 C12 C13  SING N N 30 
MY3 C12 N2   SING N N 31 
MY3 C12 H121 SING N N 32 
MY3 C12 H122 SING N N 33 
MY3 C13 O7   DOUB N N 34 
MY3 C13 O8   SING N N 35 
MY3 N3  HN3  SING N N 36 
MY3 O8  H8   SING N N 37 
MY3 O57 H57  SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MY3 SMILES           ACDLabs              12.01 "O=C(O)CN(N)C(=O)CC(O)C(=O)NCc1ccccc1"                                                                                            
MY3 SMILES_CANONICAL CACTVS               3.370 "NN(CC(O)=O)C(=O)C[C@H](O)C(=O)NCc1ccccc1"                                                                                        
MY3 SMILES           CACTVS               3.370 "NN(CC(O)=O)C(=O)C[CH](O)C(=O)NCc1ccccc1"                                                                                         
MY3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CNC(=O)[C@H](CC(=O)N(CC(=O)O)N)O"                                                                                      
MY3 SMILES           "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CNC(=O)C(CC(=O)N(CC(=O)O)N)O"                                                                                          
MY3 InChI            InChI                1.03  "InChI=1S/C13H17N3O5/c14-16(8-12(19)20)11(18)6-10(17)13(21)15-7-9-4-2-1-3-5-9/h1-5,10,17H,6-8,14H2,(H,15,21)(H,19,20)/t10-/m0/s1" 
MY3 InChIKey         InChI                1.03  ROPIKOKIAWFVJE-JTQLQIEISA-N                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MY3 "SYSTEMATIC NAME" ACDLabs              12.01 "{1-[(3S)-4-(benzylamino)-3-hydroxy-4-oxobutanoyl]hydrazinyl}acetic acid"                        
MY3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[azanyl-[(3S)-3-oxidanyl-4-oxidanylidene-4-[(phenylmethyl)amino]butanoyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MY3 "Create component"         2006-05-22 EBI  
MY3 "Modify leaving atom flag" 2011-05-17 RCSB 
MY3 "Modify descriptor"        2011-06-04 RCSB 
MY3 "Modify backbone"          2023-11-03 PDBE 
MY3 "Modify PCM"               2024-09-27 PDBE 
# 
