data_IS3
#

_chem_comp.id                                   IS3
_chem_comp.name                                 "Isopentenyl Diphosphate Beta-S"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H14 O6 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "O-(3-methylbutyl) trihydrogen thiodiphosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-21
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       264.174
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    IS3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3K56
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IS3  O    O    O  0  1  N  N  N  26.441  20.602  31.224   1.312  -0.267   0.194  O    IS3   1  
IS3  C1   C1   C  0  1  N  N  N  29.074  19.111  32.397  -2.641   0.274   0.164  C1   IS3   2  
IS3  O1   O1   O  0  1  N  N  N  28.868  20.347  31.737  -1.317  -0.257   0.242  O1   IS3   3  
IS3  P1   P1   P  0  1  N  N  N  27.624  21.341  32.021   0.001   0.668   0.222  P1   IS3   4  
IS3  C2   C2   C  0  1  N  N  N  30.402  18.644  31.819  -3.654  -0.873   0.209  C2   IS3   5  
IS3  O2   O2   O  0  1  N  N  N  27.885  22.665  31.316   0.029   1.592   1.540  O2   IS3   6  
IS3  P2   P2   P  0  1  N  N  N  25.030  20.024  31.805   2.866  -0.004  -0.134  P2   IS3   7  
IS3  C3   C3   C  0  1  N  N  N  30.760  17.238  32.272  -5.072  -0.304   0.126  C3   IS3   8  
IS3  O3   O3   O  0  1  N  N  N  27.472  21.237  33.516  -0.018   1.527  -0.983  O3   IS3   9  
IS3  C4   C4   C  0  1  N  N  N  29.942  16.571  33.362  -5.275   0.362  -1.236  C4   IS3  10  
IS3  O4   O4   O  0  1  N  N  N  25.310  19.651  33.270   3.406   1.000   0.811  O4   IS3  11  
IS3  C5   C5   C  0  1  N  N  N  31.794  16.602  31.716  -6.086  -1.437   0.296  C5   IS3  12  
IS3  O5   O5   O  0  1  N  N  N  24.653  18.843  30.876   3.012   0.544  -1.640  O5   IS3  13  
IS3  S6   S6   S  0  1  N  N  N  23.621  21.445  31.588   3.947  -1.816   0.067  S6   IS3  14  
IS3  H1   H1   H  0  1  N  N  N  29.124  19.234  33.489  -2.814   0.944   1.006  H1   IS3  15  
IS3  H1A  H1A  H  0  1  N  N  N  28.264  18.396  32.190  -2.758   0.825  -0.769  H1A  IS3  16  
IS3  H2   H2   H  0  1  N  N  N  30.329  18.651  30.721  -3.481  -1.543  -0.632  H2   IS3  17  
IS3  H2A  H2A  H  0  1  N  N  N  31.192  19.332  32.154  -3.537  -1.424   1.143  H2A  IS3  18  
IS3  H4   H4   H  0  1  N  N  N  30.342  15.565  33.558  -6.285   0.767  -1.295  H4   IS3  19  
IS3  H4A  H4A  H  0  1  N  N  N  29.996  17.173  34.281  -4.552   1.169  -1.357  H4A  IS3  20  
IS3  H4B  H4B  H  0  1  N  N  N  28.894  16.491  33.037  -5.132  -0.375  -2.026  H4B  IS3  21  
IS3  H5   H5   H  0  1  N  N  N  31.898  15.605  32.168  -5.941  -1.912   1.267  H5   IS3  22  
IS3  H5A  H5A  H  0  1  N  N  N  31.622  16.498  30.635  -7.096  -1.032   0.237  H5A  IS3  23  
IS3  H10  H10  H  0  1  N  N  N  27.930  23.363  31.959   0.042   1.094   2.369  H10  IS3  24  
IS3  H11  H11  H  0  1  N  N  N  30.788  16.229  31.835  -5.214   0.433   0.916  H11  IS3  25  
IS3  H12  H12  H  0  1  N  N  N  32.714  17.180  31.887  -5.943  -2.174  -0.494  H12  IS3  26  
IS3  H13  H13  H  0  1  N  N  N  24.653  18.035  31.375   2.677  -0.063  -2.314  H13  IS3  27  
IS3  H14  H14  H  0  1  N  N  N  23.294  21.692  32.822   5.207  -1.452  -0.231  H14  IS3  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IS3  O   P1   SING  N  N   1  
IS3  O   P2   SING  N  N   2  
IS3  C1  O1   SING  N  N   3  
IS3  C1  C2   SING  N  N   4  
IS3  C1  H1   SING  N  N   5  
IS3  C1  H1A  SING  N  N   6  
IS3  O1  P1   SING  N  N   7  
IS3  P1  O2   SING  N  N   8  
IS3  P1  O3   DOUB  N  N   9  
IS3  C2  C3   SING  N  N  10  
IS3  C2  H2   SING  N  N  11  
IS3  C2  H2A  SING  N  N  12  
IS3  P2  O4   DOUB  N  N  13  
IS3  P2  O5   SING  N  N  14  
IS3  P2  S6   SING  N  N  15  
IS3  C3  C4   SING  N  N  16  
IS3  C3  C5   SING  N  N  17  
IS3  C4  H4   SING  N  N  18  
IS3  C4  H4A  SING  N  N  19  
IS3  C4  H4B  SING  N  N  20  
IS3  C5  H5   SING  N  N  21  
IS3  C5  H5A  SING  N  N  22  
IS3  O2  H10  SING  N  N  23  
IS3  C3  H11  SING  N  N  24  
IS3  C5  H12  SING  N  N  25  
IS3  O5  H13  SING  N  N  26  
IS3  S6  H14  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IS3  SMILES            ACDLabs               11.02  "O=P(O)(OP(=O)(OCCC(C)C)O)S"  
IS3  SMILES_CANONICAL  CACTVS                3.352  "CC(C)CCO[P](O)(=O)O[P](O)(S)=O"  
IS3  SMILES            CACTVS                3.352  "CC(C)CCO[P](O)(=O)O[P](O)(S)=O"  
IS3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(C)CCO[P@@](=O)(O)O[P@](=O)(O)S"  
IS3  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C)CCOP(=O)(O)OP(=O)(O)S"  
IS3  InChI             InChI                 1.03   "InChI=1S/C5H14O6P2S/c1-5(2)3-4-10-12(6,7)11-13(8,9)14/h5H,3-4H2,1-2H3,(H,6,7)(H2,8,9,14)"  
IS3  InChIKey          InChI                 1.03   JPPCYMVZXKAWTF-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IS3  "SYSTEMATIC NAME"  ACDLabs               11.02  "O-(3-methylbutyl) trihydrogen thiodiphosphate"  
IS3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[hydroxy(3-methylbutoxy)phosphoryl]oxy-sulfanyl-phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IS3  "Create component"   2009-10-21  RCSB  
IS3  "Modify descriptor"  2011-06-04  RCSB  
IS3  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     IS3
_pdbx_chem_comp_synonyms.name        "O-(3-methylbutyl) trihydrogen thiodiphosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
