data_YN1
# 
_chem_comp.id                                    YN1 
_chem_comp.name                                  "(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)methoxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H43 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.679 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YN1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LZT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YN1 C13 C1  C 0 1 N N S N N N 10.486 5.039  22.143 0.455   0.179  -0.540 C13 YN1 1  
YN1 C01 C2  C 0 1 N N S N N N 7.714  2.085  19.644 4.223   1.091  1.804  C01 YN1 2  
YN1 C03 C3  C 0 1 N N S N N N 7.602  3.558  20.028 3.884   -0.231 1.113  C03 YN1 3  
YN1 C04 C4  C 0 1 N N N N N N 7.147  4.434  18.836 5.133   -0.780 0.421  C04 YN1 4  
YN1 C05 C5  C 0 1 N N S N N N 6.824  5.913  19.258 4.830   -2.165 -0.154 C05 YN1 5  
YN1 C06 C6  C 0 1 N N N N N N 6.398  6.779  17.982 6.051   -2.730 -0.844 C06 YN1 6  
YN1 C08 C7  C 0 1 N N N N N N 4.974  7.267  19.800 5.182   -4.463 0.435  C08 YN1 7  
YN1 C09 C8  C 0 1 N N N N N N 5.809  5.987  20.161 4.538   -3.171 0.984  C09 YN1 8  
YN1 C12 C9  C 0 1 N N N N N N 9.048  4.637  21.780 1.536   -0.052 0.484  C12 YN1 9  
YN1 C14 C10 C 0 1 N N N N N N 11.071 4.009  23.059 0.618   1.574  -1.147 C14 YN1 10 
YN1 C15 C11 C 0 1 N N N N N N 12.586 4.270  23.253 -0.400  1.762  -2.273 C15 YN1 11 
YN1 C16 C12 C 0 1 N N N N N N 13.397 3.863  21.991 -0.323  3.198  -2.796 C16 YN1 12 
YN1 C17 C13 C 0 1 N N N N N N 13.089 3.530  24.524 -0.090  0.787  -3.410 C17 YN1 13 
YN1 C19 C14 C 0 1 N N N N N N 9.621  7.395  22.140 -1.941  -0.256 -0.626 C19 YN1 14 
YN1 C21 C15 C 0 1 N N N N N N 8.557  9.575  22.391 -4.269  -0.712 -0.882 C21 YN1 15 
YN1 C22 C16 C 0 1 N N N N N N 9.547  10.752 22.678 -5.545  -0.770 -0.039 C22 YN1 16 
YN1 C23 C17 C 0 1 N N N N N N 8.996  12.017 22.021 -5.871  0.629  0.489  C23 YN1 17 
YN1 C24 C18 C 0 1 N N N N N N 9.789  13.272 22.410 -7.147  0.571  1.331  C24 YN1 18 
YN1 C25 C19 C 0 1 N N N N N N 9.758  13.448 23.924 -8.306  0.070  0.467  C25 YN1 19 
YN1 C26 C20 C 0 1 N N N N N N 10.533 14.728 24.348 -9.582  0.012  1.309  C26 YN1 20 
YN1 C27 C21 C 0 1 N N N N N N 9.680  16.039 24.108 -10.765 -0.369 0.417  C27 YN1 21 
YN1 C28 C22 C 0 1 N N N N N N 10.306 17.294 24.826 -12.041 -0.426 1.259  C28 YN1 22 
YN1 C29 C23 C 0 1 N N N N N N 10.352 12.239 24.640 -7.980  -1.329 -0.061 C29 YN1 23 
YN1 C30 C24 C 0 1 N N N N N N 9.767  10.885 24.182 -6.704  -1.271 -0.903 C30 YN1 24 
YN1 N07 N1  N 0 1 N N N N N N 5.322  7.562  18.310 6.228   -4.016 -0.493 N07 YN1 25 
YN1 N11 N2  N 0 1 N N N N N N 8.894  3.991  20.494 2.833   -0.006 0.118  N11 YN1 26 
YN1 N18 N3  N 0 1 N N N N N N 10.443 6.347  22.766 -0.857  0.076  0.103  N18 YN1 27 
YN1 O02 O1  O 0 1 N N N N N N 6.437  1.592  19.355 5.326   0.896  2.691  O02 YN1 28 
YN1 O10 O2  O 0 1 N N N N N N 6.925  6.756  16.913 6.767   -2.114 -1.605 O10 YN1 29 
YN1 O20 O3  O 0 1 N N N N N N 9.090  8.388  23.026 -3.147  -0.350 -0.035 O20 YN1 30 
YN1 O31 O4  O 0 1 N N N N N N 9.426  7.403  20.959 -1.829  -0.470 -1.817 O31 YN1 31 
YN1 O32 O5  O 0 1 N N N N N N 8.108  4.842  22.495 1.240   -0.281 1.638  O32 YN1 32 
YN1 H1  H1  H 0 1 N N N N N N 11.083 5.084  21.220 0.534   -0.571 -1.327 H1  YN1 33 
YN1 S1  S1  S 0 1 N Y N N N N 8.358  1.969  18.797 4.664   2.331  0.555  S1  YN1 34 
YN1 H3  H3  H 0 1 N N N N N N 8.077  1.563  20.541 3.359   1.438  2.371  H3  YN1 35 
YN1 H4  H4  H 0 1 N N N N N N 6.861  3.657  20.835 3.534   -0.949 1.855  H4  YN1 36 
YN1 H5  H5  H 0 1 N N N N N N 6.243  3.988  18.397 5.426   -0.108 -0.385 H5  YN1 37 
YN1 H6  H6  H 0 1 N N N N N N 7.950  4.450  18.084 5.945   -0.856 1.144  H6  YN1 38 
YN1 H7  H7  H 0 1 N N N N N N 7.744  6.356  19.668 3.988   -2.115 -0.844 H7  YN1 39 
YN1 H8  H8  H 0 1 N N N N N N 5.265  8.113  20.441 5.622   -5.041 1.248  H8  YN1 40 
YN1 H9  H9  H 0 1 N N N N N N 3.897  7.073  19.915 4.438   -5.061 -0.093 H9  YN1 41 
YN1 H10 H10 H 0 1 N N N N N N 5.176  5.090  20.093 5.017   -2.860 1.912  H10 YN1 42 
YN1 H11 H11 H 0 1 N N N N N N 6.214  6.074  21.180 3.465   -3.300 1.125  H11 YN1 43 
YN1 H12 H12 H 0 1 N N N N N N 10.565 4.060  24.034 0.451   2.327  -0.377 H12 YN1 44 
YN1 H13 H13 H 0 1 N N N N N N 10.927 3.010  22.623 1.626   1.681  -1.547 H13 YN1 45 
YN1 H14 H14 H 0 1 N N N N N N 12.727 5.349  23.412 -1.403  1.568  -1.892 H14 YN1 46 
YN1 H15 H15 H 0 1 N N N N N N 14.466 4.061  22.162 0.680   3.392  -3.177 H15 YN1 47 
YN1 H16 H16 H 0 1 N N N N N N 13.250 2.791  21.791 -1.048  3.332  -3.598 H16 YN1 48 
YN1 H17 H17 H 0 1 N N N N N N 13.049 4.449  21.127 -0.544  3.892  -1.986 H17 YN1 49 
YN1 H18 H18 H 0 1 N N N N N N 12.492 3.844  25.392 0.913   0.981  -3.791 H18 YN1 50 
YN1 H19 H19 H 0 1 N N N N N N 12.985 2.444  24.381 -0.145  -0.235 -3.038 H19 YN1 51 
YN1 H20 H20 H 0 1 N N N N N N 14.147 3.777  24.698 -0.815  0.922  -4.213 H20 YN1 52 
YN1 H21 H21 H 0 1 N N N N N N 7.566  9.809  22.806 -4.086  -1.688 -1.331 H21 YN1 53 
YN1 H22 H22 H 0 1 N N N N N N 8.471  9.413  21.306 -4.386  0.033  -1.668 H22 YN1 54 
YN1 H23 H23 H 0 1 N N N N N N 10.510 10.507 22.206 -5.397  -1.449 0.799  H23 YN1 55 
YN1 H24 H24 H 0 1 N N N N N N 7.950  12.150 22.333 -5.045  0.986  1.105  H24 YN1 56 
YN1 H25 H25 H 0 1 N N N N N N 9.040  11.896 20.929 -6.020  1.309  -0.350 H25 YN1 57 
YN1 H26 H26 H 0 1 N N N N N N 10.831 13.165 22.075 -6.999  -0.109 2.170  H26 YN1 58 
YN1 H27 H27 H 0 1 N N N N N N 9.338  14.153 21.930 -7.379  1.567  1.708  H27 YN1 59 
YN1 H28 H28 H 0 1 N N N N N N 8.711  13.561 24.241 -8.455  0.750  -0.372 H28 YN1 60 
YN1 H29 H29 H 0 1 N N N N N N 10.781 14.656 25.417 -9.465  -0.733 2.096  H29 YN1 61 
YN1 H30 H30 H 0 1 N N N N N N 11.460 14.794 23.760 -9.766  0.988  1.758  H30 YN1 62 
YN1 H31 H31 H 0 1 N N N N N N 9.631  16.237 23.027 -10.882 0.377  -0.369 H31 YN1 63 
YN1 H32 H32 H 0 1 N N N N N N 8.664  15.877 24.498 -10.582 -1.345 -0.032 H32 YN1 64 
YN1 H33 H33 H 0 1 N N N N N N 9.681  18.178 24.631 -11.924 -1.172 2.046  H33 YN1 65 
YN1 H34 H34 H 0 1 N N N N N N 10.354 17.110 25.909 -12.225 0.550  1.708  H34 YN1 66 
YN1 H35 H35 H 0 1 N N N N N N 11.320 17.470 24.439 -12.884 -0.698 0.624  H35 YN1 67 
YN1 H36 H36 H 0 1 N N N N N N 11.436 12.227 24.456 -7.832  -2.009 0.778  H36 YN1 68 
YN1 H37 H37 H 0 1 N N N N N N 10.164 12.349 25.718 -8.806  -1.686 -0.677 H37 YN1 69 
YN1 H38 H38 H 0 1 N N N N N N 8.797  10.746 24.682 -6.853  -0.591 -1.742 H38 YN1 70 
YN1 H39 H39 H 0 1 N N N N N N 10.459 10.090 24.497 -6.472  -2.267 -1.280 H39 YN1 71 
YN1 H40 H40 H 0 1 N N N N N N 4.849  8.203  17.706 6.953   -4.576 -0.812 H40 YN1 72 
YN1 H41 H41 H 0 1 N N N N N N 9.699  3.843  19.919 3.070   0.177  -0.805 H41 YN1 73 
YN1 H42 H42 H 0 1 N N N N N N 10.960 6.533  23.602 -0.946  0.247  1.054  H42 YN1 74 
YN1 H43 H43 H 0 1 N N N N N N 6.498  0.675  19.115 6.132   0.587  2.255  H43 YN1 75 
YN1 O1  O6  O 0 1 N Y N N N N ?      ?      ?      5.836   1.938  -0.146 O1  YN1 76 
YN1 O2  O7  O 0 1 N Y N N N N ?      ?      ?      3.506   2.769  -0.142 O2  YN1 77 
YN1 O3  O8  O 0 1 N Y N N N N ?      ?      ?      5.098   3.546  1.362  O3  YN1 78 
YN1 H2  H2  H 0 1 N Y N N N N ?      ?      ?      5.367   4.301  0.822  H2  YN1 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YN1 O10 C06 DOUB N N 1  
YN1 C06 N07 SING N N 2  
YN1 C06 C05 SING N N 3  
YN1 N07 C08 SING N N 4  
YN1 C04 C05 SING N N 5  
YN1 C04 C03 SING N N 6  
YN1 C05 C09 SING N N 7  
YN1 O02 C01 SING N N 8  
YN1 C01 C03 SING N N 9  
YN1 C08 C09 SING N N 10 
YN1 C03 N11 SING N N 11 
YN1 N11 C12 SING N N 12 
YN1 O31 C19 DOUB N N 13 
YN1 C12 C13 SING N N 14 
YN1 C12 O32 DOUB N N 15 
YN1 C16 C15 SING N N 16 
YN1 C23 C24 SING N N 17 
YN1 C23 C22 SING N N 18 
YN1 C19 N18 SING N N 19 
YN1 C19 O20 SING N N 20 
YN1 C13 N18 SING N N 21 
YN1 C13 C14 SING N N 22 
YN1 C21 C22 SING N N 23 
YN1 C21 O20 SING N N 24 
YN1 C24 C25 SING N N 25 
YN1 C22 C30 SING N N 26 
YN1 C14 C15 SING N N 27 
YN1 C15 C17 SING N N 28 
YN1 C25 C26 SING N N 29 
YN1 C25 C29 SING N N 30 
YN1 C27 C26 SING N N 31 
YN1 C27 C28 SING N N 32 
YN1 C30 C29 SING N N 33 
YN1 C13 H1  SING N N 34 
YN1 C01 S1  SING N N 35 
YN1 C01 H3  SING N N 36 
YN1 C03 H4  SING N N 37 
YN1 C04 H5  SING N N 38 
YN1 C04 H6  SING N N 39 
YN1 C05 H7  SING N N 40 
YN1 C08 H8  SING N N 41 
YN1 C08 H9  SING N N 42 
YN1 C09 H10 SING N N 43 
YN1 C09 H11 SING N N 44 
YN1 C14 H12 SING N N 45 
YN1 C14 H13 SING N N 46 
YN1 C15 H14 SING N N 47 
YN1 C16 H15 SING N N 48 
YN1 C16 H16 SING N N 49 
YN1 C16 H17 SING N N 50 
YN1 C17 H18 SING N N 51 
YN1 C17 H19 SING N N 52 
YN1 C17 H20 SING N N 53 
YN1 C21 H21 SING N N 54 
YN1 C21 H22 SING N N 55 
YN1 C22 H23 SING N N 56 
YN1 C23 H24 SING N N 57 
YN1 C23 H25 SING N N 58 
YN1 C24 H26 SING N N 59 
YN1 C24 H27 SING N N 60 
YN1 C25 H28 SING N N 61 
YN1 C26 H29 SING N N 62 
YN1 C26 H30 SING N N 63 
YN1 C27 H31 SING N N 64 
YN1 C27 H32 SING N N 65 
YN1 C28 H33 SING N N 66 
YN1 C28 H34 SING N N 67 
YN1 C28 H35 SING N N 68 
YN1 C29 H36 SING N N 69 
YN1 C29 H37 SING N N 70 
YN1 C30 H38 SING N N 71 
YN1 C30 H39 SING N N 72 
YN1 N07 H40 SING N N 73 
YN1 N11 H41 SING N N 74 
YN1 N18 H42 SING N N 75 
YN1 O02 H43 SING N N 76 
YN1 S1  O1  DOUB N N 77 
YN1 S1  O2  DOUB N N 78 
YN1 S1  O3  SING N N 79 
YN1 O3  H2  SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YN1 SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                  
YN1 InChI            InChI                1.03  "InChI=1S/C24H43N3O8S/c1-4-5-16-6-8-17(9-7-16)14-35-24(31)27-19(12-15(2)3)22(29)26-20(23(30)36(32,33)34)13-18-10-11-25-21(18)28/h15-20,23,30H,4-14H2,1-3H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t16-,17-,18-,19-,20-,23-/m0/s1" 
YN1 InChIKey         InChI                1.03  ZJKUZJJPWZXFHP-LZVKGNEYSA-N                                                                                                                                                                                                        
YN1 SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]1CC[C@@H](CC1)COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                   
YN1 SMILES           CACTVS               3.385 "CCC[CH]1CC[CH](CC1)COC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                              
YN1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                   
YN1 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1CCC(CC1)COC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YN1 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]methoxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"                           
YN1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YN1 "Create component" 2021-03-12 RCSB 
YN1 "Initial release"  2021-03-24 RCSB 
YN1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YN1 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
