data_TM1
# 
_chem_comp.id                                    TM1 
_chem_comp.name                                  
;2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H15 N8 O13 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-01-07 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.310 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TM1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3AR5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TM1 N1     N1   N 0  1 Y N N 39.356 -6.409 136.376 0.246  -6.153 -0.186 N1   TM1 1  
TM1 C2     C2   C 0  1 Y N N 38.800 -5.490 137.258 -0.588 -5.238 -0.646 C2   TM1 2  
TM1 N3     N3   N 0  1 Y N N 38.256 -4.310 136.803 -0.292 -3.955 -0.660 N3   TM1 3  
TM1 C4     C4   C 0  1 Y N N 38.223 -3.955 135.444 0.880  -3.526 -0.203 C4   TM1 4  
TM1 C5     C5   C 0  1 Y N N 38.776 -4.857 134.519 1.802  -4.460 0.298  C5   TM1 5  
TM1 C6     C6   C 0  1 Y N N 39.355 -6.109 134.982 1.440  -5.818 0.292  C6   TM1 6  
TM1 N6     N6   N 0  1 N N N 39.873 -6.956 134.096 2.306  -6.784 0.773  N6   TM1 7  
TM1 N7     N7   N 0  1 Y N N 38.670 -4.386 133.292 2.897  -3.768 0.693  N7   TM1 8  
TM1 C8     C8   C 0  1 Y N N 38.063 -3.202 133.413 2.711  -2.499 0.472  C8   TM1 9  
TM1 N9     N9   N 0  1 Y N N 37.787 -2.932 134.721 1.481  -2.298 -0.080 N9   TM1 10 
TM1 PA     PA   P 0  1 N N N 35.516 -0.828 129.727 4.587  3.506  -0.380 PA   TM1 11 
TM1 "C1'"  C1*  C 0  1 N N R 37.064 -1.622 135.277 0.906  -1.009 -0.471 C1*  TM1 12 
TM1 O1A    O1A  O 0  1 N N N 35.017 0.186  128.632 5.414  2.917  0.870  O1A  TM1 13 
TM1 C1F    C1F  C 0  1 N N N 37.599 1.504  136.660 -2.071 0.391  0.132  C1F  TM1 14 
TM1 "C2'"  C2*  C 0  1 N N R 38.015 -0.374 135.434 0.019  -0.442 0.664  C2*  TM1 15 
TM1 "O2'"  O2*  O 0  1 N N N 38.167 0.111  136.802 -1.346 -0.815 0.419  O2*  TM1 16 
TM1 O2A    O2A  O 0  1 N N N 34.690 -2.090 129.653 4.043  4.837  -0.029 O2A  TM1 17 
TM1 C2F    C2F  C 0  1 N N N 38.807 2.366  137.121 -2.650 0.951  1.396  C2F  TM1 18 
TM1 N2F    N2F  N 1  1 N N N 40.128 2.364  136.448 -1.848 0.877  2.637  N2F  TM1 19 
TM1 O2F    O2F  O -1 1 N N N 40.442 1.709  135.471 -1.851 -0.142 3.305  O2F  TM1 20 
TM1 "C3'"  C3*  C 0  1 N N R 37.471 0.670  134.496 0.073  1.090  0.391  C3*  TM1 21 
TM1 "O3'"  O3*  O 0  1 N N N 37.077 1.819  135.290 -1.109 1.318  -0.411 O3*  TM1 22 
TM1 O3A    O3A  O 0  1 N N N 37.043 -1.143 129.448 5.564  3.644  -1.652 O3A  TM1 23 
TM1 C3F    C3F  C 0  1 N N N 38.700 3.213  138.228 -3.827 1.498  1.446  C3F  TM1 24 
TM1 O3F    O3F  O 0  1 N N N 41.074 3.072  136.841 -1.185 1.835  2.992  O3F  TM1 25 
TM1 "C4'"  C4*  C 0  1 N N R 36.311 0.222  133.772 1.315  1.268  -0.501 C4*  TM1 26 
TM1 "O4'"  O4*  O 0  1 N N N 36.167 -1.106 134.300 1.944  -0.018 -0.625 O4*  TM1 27 
TM1 C4F    C4F  C 0  1 N N N 37.580 3.405  139.023 -4.717 1.623  0.247  C4F  TM1 28 
TM1 N4F    N4F  N 1  1 N N N 37.501 4.213  140.071 -4.637 2.991  -0.270 N4F  TM1 29 
TM1 O4F    O4F  O -1 1 N N N 37.540 3.825  141.214 -3.567 3.439  -0.644 O4F  TM1 30 
TM1 "C5'"  C5*  C 0  1 N N N 36.418 0.277  132.158 2.283  2.260  0.147  C5*  TM1 31 
TM1 "O5'"  O5*  O 0  1 N N N 35.341 -0.100 131.199 3.376  2.508  -0.739 O5*  TM1 32 
TM1 C5F    C5F  C 0  1 N N N 36.423 2.667  138.675 -4.314 0.665  -0.833 C5F  TM1 33 
TM1 O5F    O5F  O 0  1 N N N 37.381 5.390  139.948 -5.639 3.681  -0.326 O5F  TM1 34 
TM1 C6F    C6F  C 0  1 N N N 36.343 1.704  137.517 -3.137 0.118  -0.886 C6F  TM1 35 
TM1 N6F    N6F  N 1  1 N N N 35.084 1.075  137.357 -2.836 -0.813 -1.996 N6F  TM1 36 
TM1 O6F    O6F  O -1 1 N N N 34.146 1.299  138.096 -3.685 -1.053 -2.837 O6F  TM1 37 
TM1 O7F    O7F  O 0  1 N N N 34.796 0.302  136.538 -1.741 -1.340 -2.070 O7F  TM1 38 
TM1 H2     H2   H 0  1 N N N 38.795 -5.705 138.316 -1.548 -5.554 -1.026 H2   TM1 39 
TM1 HN6    HN6  H 0  1 N N N 40.225 -7.762 134.571 2.045  -7.718 0.763  HN6  TM1 40 
TM1 HN6A   HN6A H 0  0 N N N 39.164 -7.235 133.448 3.175  -6.527 1.119  HN6A TM1 41 
TM1 H8     H8   H 0  1 N N N 37.824 -2.548 132.588 3.425  -1.720 0.694  H8   TM1 42 
TM1 "H1'"  H1*  H 0  1 N N N 36.630 -1.961 136.229 0.331  -1.110 -1.391 H1*  TM1 43 
TM1 HO1A   HO1A H 0  0 N N N 34.298 -0.200 128.146 5.800  2.045  0.710  HO1A TM1 44 
TM1 "H2'"  H2*  H 0  1 N N N 39.047 -0.655 135.177 0.366  -0.726 1.658  H2*  TM1 45 
TM1 "H3'"  H3*  H 0  1 N N N 38.257 0.904  133.763 0.097  1.691  1.300  H3*  TM1 46 
TM1 HO3A   HO3A H 0  0 N N N 37.150 -2.073 129.286 6.318  4.231  -1.507 HO3A TM1 47 
TM1 H3F    H3F  H 0  1 N N N 39.582 3.777  138.492 -4.179 1.880  2.393  H3F  TM1 48 
TM1 "H4'"  H4*  H 0  1 N N N 35.439 0.877  133.915 1.015  1.630  -1.485 H4*  TM1 49 
TM1 H4F    H4F  H 0  1 N N N 38.425 4.018  139.371 -5.745 1.413  0.543  H4F  TM1 50 
TM1 "H5'"  H5*  H 0  1 N N N 36.624 1.334  131.934 1.762  3.195  0.353  H5*  TM1 51 
TM1 "H5'A" H5*A H 0  0 N N N 37.248 -0.403 131.917 2.660  1.842  1.081  H5*A TM1 52 
TM1 H5F    H5F  H 0  1 N N N 35.538 2.803  139.279 -5.032 0.420  -1.601 H5F  TM1 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TM1 N1    C2     DOUB Y N 1  
TM1 N1    C6     SING Y N 2  
TM1 C2    N3     SING Y N 3  
TM1 C2    H2     SING N N 4  
TM1 N3    C4     DOUB Y N 5  
TM1 C4    C5     SING Y N 6  
TM1 C4    N9     SING Y N 7  
TM1 C5    C6     DOUB Y N 8  
TM1 C5    N7     SING Y N 9  
TM1 C6    N6     SING N N 10 
TM1 N6    HN6    SING N N 11 
TM1 N6    HN6A   SING N N 12 
TM1 N7    C8     DOUB Y N 13 
TM1 C8    N9     SING Y N 14 
TM1 C8    H8     SING N N 15 
TM1 N9    "C1'"  SING N N 16 
TM1 PA    O1A    SING N N 17 
TM1 PA    O2A    DOUB N N 18 
TM1 PA    O3A    SING N N 19 
TM1 PA    "O5'"  SING N N 20 
TM1 "C1'" "C2'"  SING N N 21 
TM1 "C1'" "O4'"  SING N N 22 
TM1 "C1'" "H1'"  SING N N 23 
TM1 O1A   HO1A   SING N N 24 
TM1 C1F   "O2'"  SING N N 25 
TM1 C1F   C2F    SING N N 26 
TM1 C1F   "O3'"  SING N N 27 
TM1 C1F   C6F    SING N N 28 
TM1 "C2'" "O2'"  SING N N 29 
TM1 "C2'" "C3'"  SING N N 30 
TM1 "C2'" "H2'"  SING N N 31 
TM1 C2F   N2F    SING N N 32 
TM1 C2F   C3F    DOUB N N 33 
TM1 N2F   O2F    SING N N 34 
TM1 N2F   O3F    DOUB N N 35 
TM1 "C3'" "O3'"  SING N N 36 
TM1 "C3'" "C4'"  SING N N 37 
TM1 "C3'" "H3'"  SING N N 38 
TM1 O3A   HO3A   SING N N 39 
TM1 C3F   C4F    SING N N 40 
TM1 C3F   H3F    SING N N 41 
TM1 "C4'" "O4'"  SING N N 42 
TM1 "C4'" "C5'"  SING N N 43 
TM1 "C4'" "H4'"  SING N N 44 
TM1 C4F   N4F    SING N N 45 
TM1 C4F   C5F    SING N N 46 
TM1 C4F   H4F    SING N N 47 
TM1 N4F   O4F    SING N N 48 
TM1 N4F   O5F    DOUB N N 49 
TM1 "C5'" "O5'"  SING N N 50 
TM1 "C5'" "H5'"  SING N N 51 
TM1 "C5'" "H5'A" SING N N 52 
TM1 C5F   C6F    DOUB N N 53 
TM1 C5F   H5F    SING N N 54 
TM1 C6F   N6F    SING N N 55 
TM1 N6F   O6F    SING N N 56 
TM1 N6F   O7F    DOUB N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TM1 SMILES           ACDLabs              12.01 "[O-][N+](=O)C5=CC([N+]([O-])=O)C=C([N+]([O-])=O)C15OC4C(O1)C(OC4n2c3ncnc(N)c3nc2)COP(=O)(O)O" 
TM1 SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@H]4O[C@@]5(O[C@@H]34)C(=C[C@H](C=C5[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O" 
TM1 SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH]4O[C]5(O[CH]34)C(=C[CH](C=C5[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O" 
TM1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O)O)OC5(O4)C(=CC(C=C5[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-])N" 
TM1 SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)O)OC5(O4)C(=CC(C=C5[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-])N" 
TM1 InChI            InChI                1.03  
"InChI=1S/C16H15N8O13P/c17-13-10-14(19-4-18-13)21(5-20-10)15-12-11(7(35-15)3-34-38(31,32)33)36-16(37-12)8(23(27)28)1-6(22(25)26)2-9(16)24(29)30/h1-2,4-7,11-12,15H,3H2,(H2,17,18,19)(H2,31,32,33)/t6?,7-,11-,12-,15-,16-/m1/s1" 
TM1 InChIKey         InChI                1.03  OHPXFACYTRBVRA-DLHKNTDHSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TM1 "SYSTEMATIC NAME" ACDLabs              12.01 
;2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate)
;
TM1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 
;[(3aR,4R,6R,6aR)-6-(6-aminopurin-9-yl)-1',3',5'-trinitro-spiro[3a,4,6,6a-tetrahydrofuro[3,4-d][1,3]dioxole-2,6'-cyclohexa-1,4-diene]-4-yl]methyl dihydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TM1 "Create component"  2011-01-07 PDBJ 
TM1 "Modify descriptor" 2011-06-04 RCSB 
# 
