data_AV1
#

_chem_comp.id                                   AV1
_chem_comp.name                                 "[(2R,3S,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H22 Br N5 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "8-BROMOADENOSINE-5'-O-DIPHOSPHORIBOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-09-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       622.212
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    AV1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ZWX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AV1  BR1     BR1     BR  0  0  N  N  N  1.557   5.628  -14.181  -2.759   0.195   1.987  BR1     AV1   1  
AV1  O3      O3      O   0  1  N  N  N  4.085  -0.989  -19.496   2.614   1.789  -0.139  O3      AV1   2  
AV1  PA      PA      P   0  1  N  N  N  3.999   0.634  -19.227   1.358   2.740   0.195  PA      AV1   3  
AV1  PN      PN      P   0  1  N  N  N  5.510  -1.836  -19.711   4.016   1.491   0.592  PN      AV1   4  
AV1  "C1'"   "C1'"   C   0  1  N  N  R  4.501   4.167  -14.972  -3.778   0.363  -1.186  "C1'"   AV1   5  
AV1  N1A     N1A     N   0  1  Y  N  N  5.484   3.359   -9.826  -6.474  -4.066  -0.867  N1A     AV1   6  
AV1  O1A     O1A     O   0  1  N  N  N  2.526   0.915  -18.649   1.697   4.251  -0.243  O1A     AV1   7  
AV1  C1D     C1D     C   0  1  N  N  N  7.732  -3.629  -15.108   7.588  -2.230  -2.115  C1D     AV1   8  
AV1  O1N     O1N     O   0  1  N  N  N  6.343  -1.245  -20.785   3.786   1.299   2.042  O1N     AV1   9  
AV1  "C2'"   "C2'"   C   0  1  N  N  R  5.954   4.722  -15.077  -4.563   1.645  -0.811  "C2'"   AV1  10  
AV1  "O2'"   "O2'"   O   0  1  N  N  N  5.930   6.092  -15.508  -5.806   1.706  -1.513  "O2'"   AV1  11  
AV1  C2A     C2A     C   0  1  Y  N  N  6.234   3.024  -10.880  -6.330  -3.260  -1.903  C2A     AV1  12  
AV1  O2A     O2A     O   0  1  N  N  N  4.269   1.396  -20.461   1.080   2.698   1.648  O2A     AV1  13  
AV1  C2D     C2D     C   0  1  N  N  S  6.598  -4.579  -14.666   8.477  -2.416  -0.859  C2D     AV1  14  
AV1  O2D     O2D     O   0  1  N  N  N  7.074  -5.944  -14.620   9.159  -3.671  -0.898  O2D     AV1  15  
AV1  O2N     O2N     O   0  1  N  N  N  5.132  -3.428  -19.980   5.014   2.735   0.368  O2N     AV1  16  
AV1  "C3'"   "C3'"   C   0  1  N  N  S  6.652   3.804  -16.107  -3.605   2.764  -1.287  "C3'"   AV1  17  
AV1  "O3'"   "O3'"   O   0  1  N  N  N  7.557   4.541  -16.961  -3.996   3.242  -2.575  "O3'"   AV1  18  
AV1  N3A     N3A     N   0  1  Y  N  N  5.859   3.284  -12.129  -5.611  -2.158  -1.847  N3A     AV1  19  
AV1  C3D     C3D     C   0  1  N  N  S  5.537  -4.418  -15.778   7.434  -2.388   0.284  C3D     AV1  20  
AV1  O3D     O3D     O   0  1  N  N  N  4.912  -5.672  -16.151   7.090  -3.718   0.680  O3D     AV1  21  
AV1  "C4'"   "C4'"   C   0  1  N  N  R  5.442   3.217  -16.872  -2.228   2.075  -1.362  "C4'"   AV1  22  
AV1  "O4'"   "O4'"   O   0  1  N  N  N  4.531   2.895  -15.744  -2.404   0.719  -0.919  "O4'"   AV1  23  
AV1  C4A     C4A     C   0  1  Y  N  N  4.683   3.906  -12.366  -4.992  -1.810  -0.724  C4A     AV1  24  
AV1  C4D     C4D     C   0  1  N  N  R  6.338  -3.818  -16.955   6.215  -1.677  -0.334  C4D     AV1  25  
AV1  O4D     O4D     O   0  1  N  N  N  7.757  -3.808  -16.550   6.573  -1.302  -1.675  O4D     AV1  26  
AV1  "C5'"   "C5'"   C   0  1  N  N  N  5.914   2.093  -17.884  -1.235   2.796  -0.450  "C5'"   AV1  27  
AV1  "O5'"   "O5'"   O   0  1  N  N  N  5.010   0.963  -17.969   0.064   2.224  -0.614  "O5'"   AV1  28  
AV1  C5A     C5A     C   0  1  Y  N  N  3.876   4.266  -11.272  -5.115  -2.635   0.408  C5A     AV1  29  
AV1  C5D     C5D     C   0  1  N  N  N  5.790  -2.386  -17.152   5.872  -0.429   0.481  C5D     AV1  30  
AV1  O5D     O5D     O   0  1  N  N  N  6.336  -1.775  -18.313   4.673   0.158  -0.028  O5D     AV1  31  
AV1  C6A     C6A     C   0  1  Y  N  N  4.294   3.980   -9.973  -5.892  -3.799   0.298  C6A     AV1  32  
AV1  N6A     N6A     N   0  1  N  N  N  3.534   4.317   -8.921  -6.050  -4.650   1.379  N6A     AV1  33  
AV1  N7A     N7A     N   0  1  Y  N  N  2.787   4.855  -11.738  -4.397  -2.058   1.402  N7A     AV1  34  
AV1  C8A     C8A     C   0  1  Y  N  N  2.904   4.869  -13.066  -3.854  -0.958   0.963  C8A     AV1  35  
AV1  N9A     N9A     N   0  1  Y  N  N  4.042   4.289  -13.487  -4.193  -0.762  -0.343  N9A     AV1  36  
AV1  "H1'"   "H1'"   H   0  1  N  N  N  3.662   4.703  -15.439  -3.914   0.124  -2.241  "H1'"   AV1  37  
AV1  H1D     H1D     H   0  1  N  N  N  7.522  -2.586  -14.830   8.166  -1.806  -2.935  H1D     AV1  38  
AV1  H1DA    H1DA    H   0  0  N  N  N  8.693  -3.899  -14.647   7.139  -3.178  -2.410  H1DA    AV1  39  
AV1  "H2'"   "H2'"   H   0  1  N  N  N  6.487   4.718  -14.115  -4.724   1.702   0.266  "H2'"   AV1  40  
AV1  "HO2'"  "HO2'"  H   0  0  N  N  N  6.819   6.421  -15.569  -6.334   2.490  -1.311  "HO2'"  AV1  41  
AV1  H2A     H2A     H   0  1  N  N  N  7.177   2.525  -10.712  -6.819  -3.514  -2.832  H2A     AV1  42  
AV1  H2D     H2D     H   0  1  N  N  N  6.210  -4.348  -13.663   9.186  -1.593  -0.760  H2D     AV1  43  
AV1  HO2D    HO2D    H   0  0  N  N  N  6.367  -6.517  -14.347   9.758  -3.770  -1.650  HO2D    AV1  44  
AV1  "H3'"   "H3'"   H   0  1  N  N  N  7.299   3.034  -15.661  -3.585   3.582  -0.567  "H3'"   AV1  45  
AV1  "HO3'"  "HO3'"  H   0  0  N  N  N  7.966   3.946  -17.578  -4.880   3.634  -2.598  "HO3'"  AV1  46  
AV1  H3D     H3D     H   0  1  N  N  N  4.696  -3.787  -15.453   7.816  -1.824   1.136  H3D     AV1  47  
AV1  HO3D    HO3D    H   0  0  N  N  N  4.271  -5.516  -16.835   7.835  -4.231   1.023  HO3D    AV1  48  
AV1  "H4'"   "H4'"   H   0  1  N  N  N  4.900   3.853  -17.587  -1.865   2.085  -2.390  "H4'"   AV1  49  
AV1  H4D     H4D     H   0  1  N  N  N  6.246  -4.382  -17.895   5.361  -2.355  -0.354  H4D     AV1  50  
AV1  "H5'"   "H5'"   H   0  1  N  N  N  5.989   2.545  -18.884  -1.202   3.854  -0.712  "H5'"   AV1  51  
AV1  "H5'A"  "H5'A"  H   0  0  N  N  N  6.893   1.721  -17.547  -1.551   2.688   0.588  "H5'A"  AV1  52  
AV1  H5D     H5D     H   0  1  N  N  N  4.696  -2.436  -17.259   5.725  -0.706   1.525  H5D     AV1  53  
AV1  H5DA    H5DA    H   0  0  N  N  N  6.057  -1.780  -16.274   6.688   0.289   0.407  H5DA    AV1  54  
AV1  HN6A    HN6A    H   0  0  N  N  N  3.991   4.038   -8.076  -6.589  -5.451   1.291  HN6A    AV1  55  
AV1  HN6B    HN6B    H   0  0  N  N  N  3.396   5.307   -8.913  -5.620  -4.445   2.224  HN6B    AV1  56  
AV1  H11A    H11A    H   0  0  N  N  N  2.077   1.534  -19.213   1.890   4.354  -1.185  H11A    AV1  57  
AV1  H12A    H12A    H   0  0  N  N  N  5.520  -3.712  -20.799   5.210   2.919  -0.561  H12A    AV1  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AV1  BR1    C8A     SING  N  N   1  
AV1  O3     PA      SING  N  N   2  
AV1  O3     PN      SING  N  N   3  
AV1  PA     O1A     SING  N  N   4  
AV1  PA     O2A     DOUB  N  N   5  
AV1  PA     "O5'"   SING  N  N   6  
AV1  PN     O1N     DOUB  N  N   7  
AV1  PN     O2N     SING  N  N   8  
AV1  PN     O5D     SING  N  N   9  
AV1  "C1'"  "C2'"   SING  N  N  10  
AV1  "C1'"  "O4'"   SING  N  N  11  
AV1  "C1'"  N9A     SING  N  N  12  
AV1  N1A    C2A     DOUB  Y  N  13  
AV1  N1A    C6A     SING  Y  N  14  
AV1  C1D    C2D     SING  N  N  15  
AV1  C1D    O4D     SING  N  N  16  
AV1  "C2'"  "O2'"   SING  N  N  17  
AV1  "C2'"  "C3'"   SING  N  N  18  
AV1  C2A    N3A     SING  Y  N  19  
AV1  C2D    O2D     SING  N  N  20  
AV1  C2D    C3D     SING  N  N  21  
AV1  "C3'"  "O3'"   SING  N  N  22  
AV1  "C3'"  "C4'"   SING  N  N  23  
AV1  N3A    C4A     DOUB  Y  N  24  
AV1  C3D    O3D     SING  N  N  25  
AV1  C3D    C4D     SING  N  N  26  
AV1  "C4'"  "O4'"   SING  N  N  27  
AV1  "C4'"  "C5'"   SING  N  N  28  
AV1  C4A    C5A     SING  Y  N  29  
AV1  C4A    N9A     SING  Y  N  30  
AV1  C4D    O4D     SING  N  N  31  
AV1  C4D    C5D     SING  N  N  32  
AV1  "C5'"  "O5'"   SING  N  N  33  
AV1  C5A    C6A     DOUB  Y  N  34  
AV1  C5A    N7A     SING  Y  N  35  
AV1  C5D    O5D     SING  N  N  36  
AV1  C6A    N6A     SING  N  N  37  
AV1  N7A    C8A     DOUB  Y  N  38  
AV1  C8A    N9A     SING  Y  N  39  
AV1  "C1'"  "H1'"   SING  N  N  40  
AV1  C1D    H1D     SING  N  N  41  
AV1  C1D    H1DA    SING  N  N  42  
AV1  "C2'"  "H2'"   SING  N  N  43  
AV1  "O2'"  "HO2'"  SING  N  N  44  
AV1  C2A    H2A     SING  N  N  45  
AV1  C2D    H2D     SING  N  N  46  
AV1  O2D    HO2D    SING  N  N  47  
AV1  "C3'"  "H3'"   SING  N  N  48  
AV1  "O3'"  "HO3'"  SING  N  N  49  
AV1  C3D    H3D     SING  N  N  50  
AV1  O3D    HO3D    SING  N  N  51  
AV1  "C4'"  "H4'"   SING  N  N  52  
AV1  C4D    H4D     SING  N  N  53  
AV1  "C5'"  "H5'"   SING  N  N  54  
AV1  "C5'"  "H5'A"  SING  N  N  55  
AV1  C5D    H5D     SING  N  N  56  
AV1  C5D    H5DA    SING  N  N  57  
AV1  N6A    HN6A    SING  N  N  58  
AV1  N6A    HN6B    SING  N  N  59  
AV1  O1A    H11A    SING  N  N  60  
AV1  O2N    H12A    SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AV1  InChI             InChI                 1.03   "InChI=1S/C15H22BrN5O13P2/c16-15-20-8-12(17)18-4-19-13(8)21(15)14-11(25)10(24)7(33-14)3-32-36(28,29)34-35(26,27)31-2-6-9(23)5(22)1-30-6/h4-7,9-11,14,22-25H,1-3H2,(H,26,27)(H,28,29)(H2,17,18,19)/p-2/t5-,6+,7+,9-,10+,11+,14+/m0/s1"  
AV1  InChIKey          InChI                 1.03   DTBPYRLOWSYQCZ-ZVIMGNLFSA-L  
AV1  SMILES            ACDLabs               12.01  "O=P(O)(OCC1OCC(O)C1O)OP(=O)(O)OCC4OC(n3c(Br)nc2c(ncnc23)N)C(O)C4O"  
AV1  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2n([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4OC[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O)c(Br)nc12"  
AV1  SMILES            CACTVS                3.370  "Nc1ncnc2n([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4OC[CH](O)[CH]4O)[CH](O)[CH]3O)c(Br)nc12"  
AV1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "c1nc(c2c(n1)n(c(n2)Br)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H](CO4)O)O)O)O)N"  
AV1  SMILES            "OpenEye OEToolkits"  1.7.2  "c1nc(c2c(n1)n(c(n2)Br)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(CO4)O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AV1  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R,3S,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4S)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
AV1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "[[(2R,3S,4R,5R)-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AV1  "Create component"  2011-09-07  EBI   
AV1  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AV1
_pdbx_chem_comp_synonyms.name        "8-BROMOADENOSINE-5'-O-DIPHOSPHORIBOSE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
