data_YP0
# 
_chem_comp.id                                    YP0 
_chem_comp.name                                  "(4M,8P)-8-(2-fluorophenyl)-4-[(3P)-3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-2H-1,5-benzodiazepin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H17 F N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.416 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YP0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G49 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YP0 C01 C1  C 0 1 Y N N N N N -11.882 7.635  43.384 -2.409 -1.622 0.525  C01 YP0 1  
YP0 C02 C2  C 0 1 Y N N N N N -12.891 5.252  44.509 -3.320 0.822  -0.409 C02 YP0 2  
YP0 C04 C3  C 0 1 Y N N N N N -11.872 5.153  43.549 -4.208 -0.082 0.161  C04 YP0 3  
YP0 C05 C4  C 0 1 Y N N N N N -13.435 6.534  44.896 -1.966 0.516  -0.517 C05 YP0 4  
YP0 C06 C5  C 0 1 Y N N N N N -12.908 7.735  44.331 -1.502 -0.716 -0.052 C06 YP0 5  
YP0 C10 C6  C 0 1 N N N N N N -14.843 7.578  46.966 0.074  1.801  -0.665 C10 YP0 6  
YP0 C15 C7  C 0 1 Y N N N N N -16.086 13.294 46.109 4.685  -2.150 -0.153 C15 YP0 7  
YP0 C16 C8  C 0 1 Y N N N N N -15.409 12.813 44.965 4.565  -0.772 0.047  C16 YP0 8  
YP0 C17 C9  C 0 1 Y N N N N N -16.081 12.530 47.266 3.555  -2.936 -0.263 C17 YP0 9  
YP0 C18 C10 C 0 1 Y N N N N N -14.742 11.577 45.012 3.303  -0.191 0.136  C18 YP0 10 
YP0 C19 C11 C 0 1 Y N N N N N -15.326 13.515 43.626 5.778  0.067  0.165  C19 YP0 11 
YP0 C21 C12 C 0 1 Y N N N N N -15.452 13.814 41.415 7.826  0.730  0.253  C21 YP0 12 
YP0 C24 C13 C 0 1 N N N N N N -15.732 13.557 39.934 9.333  0.761  0.256  C24 YP0 13 
YP0 C25 C14 C 0 1 Y N N N N N -11.302 3.878  43.206 -5.648 0.257  0.269  C25 YP0 14 
YP0 C26 C15 C 0 1 Y N N N N N -11.060 3.493  41.886 -6.616 -0.645 -0.177 C26 YP0 15 
YP0 C27 C16 C 0 1 Y N N N N N -10.090 1.410  42.617 -8.337 0.891  0.471  C27 YP0 16 
YP0 C28 C17 C 0 1 Y N N N N N -10.299 1.796  43.931 -7.381 1.786  0.919  C28 YP0 17 
YP0 C03 C18 C 0 1 Y N N N N N -11.342 6.337  43.014 -3.742 -1.311 0.630  C03 YP0 18 
YP0 N07 N1  N 0 1 N N N N N N -13.545 8.988  44.765 -0.206 -1.110 -0.125 N07 YP0 19 
YP0 C08 C19 C 0 1 N N N N N N -13.991 9.469  46.078 0.825  -0.386 0.117  C08 YP0 20 
YP0 C09 C20 C 0 1 N N N N N N -13.819 8.607  47.231 0.702  1.068  0.493  C09 YP0 21 
YP0 N11 N2  N 0 1 N N N N N N -14.572 6.646  45.864 -1.147 1.480  -1.092 N11 YP0 22 
YP0 C12 C21 C 0 1 Y N N N N N -14.710 10.816 46.167 2.165  -0.991 0.025  C12 YP0 23 
YP0 O13 O1  O 0 1 N N N N N N -15.879 7.504  47.625 0.686  2.693  -1.213 O13 YP0 24 
YP0 C14 C22 C 0 1 Y N N N N N -15.405 11.277 47.309 2.300  -2.368 -0.176 C14 YP0 25 
YP0 O20 O2  O 0 1 Y N N N N N -15.682 12.932 42.444 7.055  -0.360 0.098  O20 YP0 26 
YP0 N22 N3  N 0 1 Y N N N N N -14.945 14.932 41.976 7.035  1.756  0.401  N22 YP0 27 
YP0 N23 N4  N 0 1 Y N N N N N -14.860 14.754 43.348 5.810  1.366  0.347  N23 YP0 28 
YP0 C29 C23 C 0 1 Y N N N N N -10.475 2.265  41.585 -7.956 -0.322 -0.073 C29 YP0 29 
YP0 C30 C24 C 0 1 Y N N N N N -10.914 3.022  44.227 -6.040 1.475  0.821  C30 YP0 30 
YP0 F31 F1  F 0 1 N N N N N N -11.429 4.280  40.881 -6.244 -1.830 -0.709 F31 YP0 31 
YP0 H32 H1  H 0 1 N N N N N N -11.488 8.530  42.924 -2.054 -2.576 0.886  H32 YP0 32 
YP0 H33 H2  H 0 1 N N N N N N -13.276 4.353  44.967 -3.684 1.772  -0.771 H33 YP0 33 
YP0 H39 H3  H 0 1 N N N N N N -16.600 14.243 46.082 5.663  -2.600 -0.227 H39 YP0 34 
YP0 H40 H4  H 0 1 N N N N N N -16.596 12.889 48.145 3.654  -4.000 -0.418 H40 YP0 35 
YP0 H41 H5  H 0 1 N N N N N N -14.243 11.213 44.126 3.206  0.873  0.292  H41 YP0 36 
YP0 H42 H6  H 0 1 N N N N N N -16.151 12.548 39.809 9.697  0.623  1.273  H42 YP0 37 
YP0 H43 H7  H 0 1 N N N N N N -16.452 14.301 39.563 9.713  -0.040 -0.378 H43 YP0 38 
YP0 H44 H8  H 0 1 N N N N N N -14.794 13.638 39.364 9.677  1.722  -0.127 H44 YP0 39 
YP0 H45 H9  H 0 1 N N N N N N -9.634  0.457  42.394 -9.385 1.139  0.550  H45 YP0 40 
YP0 H46 H10 H 0 1 N N N N N N -9.986  1.147  44.735 -7.685 2.731  1.343  H46 YP0 41 
YP0 H34 H11 H 0 1 N N N N N N -10.520 6.283  42.316 -4.428 -2.016 1.075  H34 YP0 42 
YP0 H35 H12 H 0 1 N N N N N N -12.809 8.173  47.264 1.690  1.480  0.698  H35 YP0 43 
YP0 H36 H13 H 0 1 N N N N N N -14.019 9.144  48.170 0.071  1.167  1.377  H36 YP0 44 
YP0 H37 H14 H 0 1 N N N N N N -15.282 5.954  45.735 -1.490 1.956  -1.865 H37 YP0 45 
YP0 H38 H15 H 0 1 N N N N N N -15.423 10.682 48.210 1.420  -2.989 -0.263 H38 YP0 46 
YP0 H47 H16 H 0 1 N N N N N N -10.320 1.976  40.556 -8.707 -1.018 -0.418 H47 YP0 47 
YP0 H48 H17 H 0 1 N N N N N N -11.086 3.301  45.256 -5.296 2.174  1.172  H48 YP0 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YP0 C01 C03 DOUB Y N 1  
YP0 C02 C04 DOUB Y N 2  
YP0 C03 C04 SING Y N 3  
YP0 C02 C05 SING Y N 4  
YP0 C01 C06 SING Y N 5  
YP0 C05 C06 DOUB Y N 6  
YP0 C06 N07 SING N N 7  
YP0 N07 C08 DOUB N N 8  
YP0 C08 C09 SING N N 9  
YP0 C09 C10 SING N N 10 
YP0 C05 N11 SING N N 11 
YP0 C10 N11 SING N N 12 
YP0 C08 C12 SING N N 13 
YP0 C10 O13 DOUB N N 14 
YP0 C12 C14 DOUB Y N 15 
YP0 C15 C16 SING Y N 16 
YP0 C14 C17 SING Y N 17 
YP0 C15 C17 DOUB Y N 18 
YP0 C12 C18 SING Y N 19 
YP0 C16 C18 DOUB Y N 20 
YP0 C16 C19 SING N N 21 
YP0 C19 O20 SING Y N 22 
YP0 O20 C21 SING Y N 23 
YP0 C21 N22 DOUB Y N 24 
YP0 C19 N23 DOUB Y N 25 
YP0 N22 N23 SING Y N 26 
YP0 C21 C24 SING N N 27 
YP0 C04 C25 SING N N 28 
YP0 C25 C26 DOUB Y N 29 
YP0 C27 C28 SING Y N 30 
YP0 C26 C29 SING Y N 31 
YP0 C27 C29 DOUB Y N 32 
YP0 C25 C30 SING Y N 33 
YP0 C28 C30 DOUB Y N 34 
YP0 C26 F31 SING N N 35 
YP0 C01 H32 SING N N 36 
YP0 C02 H33 SING N N 37 
YP0 C15 H39 SING N N 38 
YP0 C17 H40 SING N N 39 
YP0 C18 H41 SING N N 40 
YP0 C24 H42 SING N N 41 
YP0 C24 H43 SING N N 42 
YP0 C24 H44 SING N N 43 
YP0 C27 H45 SING N N 44 
YP0 C28 H46 SING N N 45 
YP0 C03 H34 SING N N 46 
YP0 C09 H35 SING N N 47 
YP0 C09 H36 SING N N 48 
YP0 N11 H37 SING N N 49 
YP0 C14 H38 SING N N 50 
YP0 C29 H47 SING N N 51 
YP0 C30 H48 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YP0 SMILES           ACDLabs              12.01 "Cc1nnc(o1)c1cc(ccc1)C=1CC(=O)Nc2cc(ccc2N=1)c1ccccc1F"                                                                                               
YP0 InChI            InChI                1.06  "InChI=1S/C24H17FN4O2/c1-14-28-29-24(31-14)17-6-4-5-16(11-17)21-13-23(30)27-22-12-15(9-10-20(22)26-21)18-7-2-3-8-19(18)25/h2-12H,13H2,1H3,(H,27,30)" 
YP0 InChIKey         InChI                1.06  VWBYRYSGMIRSNX-UHFFFAOYSA-N                                                                                                                          
YP0 SMILES_CANONICAL CACTVS               3.385 "Cc1oc(nn1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F"                                                                                                
YP0 SMILES           CACTVS               3.385 "Cc1oc(nn1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F"                                                                                                
YP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1nnc(o1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F"                                                                                                
YP0 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1nnc(o1)c2cccc(c2)C3=Nc4ccc(cc4NC(=O)C3)c5ccccc5F"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YP0 "SYSTEMATIC NAME" ACDLabs              12.01 "(4M,8P)-8-(2-fluorophenyl)-4-[(3P)-3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-2H-1,5-benzodiazepin-2-one" 
YP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-(2-fluorophenyl)-4-[3-(5-methyl-1,3,4-oxadiazol-2-yl)phenyl]-1,3-dihydro-1,5-benzodiazepin-2-one"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YP0 "Create component" 2023-06-19 RCSB 
YP0 "Initial release"  2024-12-18 RCSB 
# 
