data_SO0
# 
_chem_comp.id                                    SO0 
_chem_comp.name                                  "(1S,3aR,6aS)-2-[(2,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H29 Cl2 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.399 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SO0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TY4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SO0 C1  C1  C  0 1 N N N N N N -6.095  -14.263 -18.084 1.408  -5.059 0.262  C1  SO0 1  
SO0 C10 C2  C  0 1 N N N N N N -6.266  -13.084 -17.122 1.822  -4.810 1.725  C10 SO0 2  
SO0 C11 C3  C  0 1 N N N N N N -9.478  -17.668 -18.747 -2.012 -0.804 0.137  C11 SO0 3  
SO0 C12 C4  C  0 1 N N N N N N -9.719  -16.412 -17.950 -0.538 -0.526 0.280  C12 SO0 4  
SO0 C13 C5  C  0 1 N N N N N N -7.892  -15.450 -19.328 0.001  -2.975 0.175  C13 SO0 5  
SO0 C14 C6  C  0 1 N N S N N N -9.140  -14.044 -17.764 1.799  -1.418 0.427  C14 SO0 6  
SO0 C15 C7  C  0 1 N N N N N N -10.544 -13.545 -17.931 2.344  -0.567 -0.691 C15 SO0 7  
SO0 C16 C8  C  0 1 N N R N N N -7.177  -14.128 -19.147 1.280  -3.654 -0.361 C16 SO0 8  
SO0 C17 C9  C  0 1 N N S N N N -12.458 -12.453 -16.911 4.095  0.819  -1.666 C17 SO0 9  
SO0 C19 C10 C  0 1 N N N N N N -13.347 -13.246 -15.932 5.125  1.801  -1.104 C19 SO0 10 
SO0 C2  C11 C  0 1 N N N N N N -7.429  -12.250 -17.656 2.473  -3.419 1.770  C2  SO0 11 
SO0 C20 C12 C  0 1 N N S N N N -13.516 -14.696 -16.391 4.432  2.778  -0.152 C20 SO0 12 
SO0 C21 C13 C  0 1 N N N N N N -14.335 -14.840 -17.676 5.448  3.801  0.407  C21 SO0 13 
SO0 C22 C14 C  0 1 N N N N N N -15.150 -16.120 -17.471 5.872  3.132  1.733  C22 SO0 14 
SO0 C24 C15 C  0 1 N N N N N N -14.278 -15.541 -15.406 3.925  2.052  1.074  C24 SO0 15 
SO0 C3  C16 C  0 1 Y N N N N N -11.676 -18.950 -18.780 -4.085 0.356  0.030  C3  SO0 16 
SO0 C34 C17 C  0 1 N N S N N N -8.195  -13.176 -18.575 2.402  -2.835 0.347  C34 SO0 17 
SO0 C4  C18 C  0 1 Y N N N N N -12.198 -20.164 -18.324 -4.704 -0.878 -0.099 C4  SO0 18 
SO0 C5  C19 C  0 1 Y N N N N N -13.483 -20.550 -18.633 -6.079 -0.951 -0.222 C5  SO0 19 
SO0 C6  C20 C  0 1 Y N N N N N -14.289 -19.732 -19.419 -6.838 0.206  -0.217 C6  SO0 20 
SO0 C7  C21 C  0 1 Y N N N N N -13.792 -18.525 -19.882 -6.222 1.439  -0.088 C7  SO0 21 
SO0 C8  C22 C  0 1 N N N N N N -12.411 -10.968 -16.533 4.762  -0.078 -2.711 C8  SO0 22 
SO0 C9  C23 C  0 1 Y N N N N N -12.498 -18.126 -19.566 -4.849 1.516  0.041  C9  SO0 23 
SO0 N13 N1  N  0 1 N N N N N N -8.960  -15.383 -18.327 0.342  -1.546 0.293  N13 SO0 24 
SO0 N16 N2  N  0 1 N N N N N N -11.091 -12.959 -16.875 3.565  -0.009 -0.579 N16 SO0 25 
SO0 N23 N3  N  0 1 N N N N N N -15.140 -16.344 -16.032 4.746  2.272  2.115  N23 SO0 26 
SO0 O1  O1  O  0 1 N N N N N N -10.375 -18.717 -18.378 -2.733 0.430  0.150  O1  SO0 27 
SO0 O26 O2  O  0 1 N N N N N N -14.098 -15.481 -14.203 2.922  1.371  1.113  O26 SO0 28 
SO0 O33 O3  O  0 1 N N N N N N -10.546 -16.364 -17.049 -0.144 0.616  0.384  O33 SO0 29 
SO0 O38 O4  O  0 1 N N N N N N -11.130 -13.692 -18.994 1.683  -0.384 -1.691 O38 SO0 30 
SO0 O9  O5  O  0 1 N N N N N N -13.695 -10.337 -16.697 5.902  -0.717 -2.132 O9  SO0 31 
SO0 CL1 CL1 CL 0 0 N N N N N N -12.065 -16.533 -20.263 -4.077 3.063  0.203  CL1 SO0 32 
SO0 CL2 CL2 CL 0 0 N N N N N N -15.975 -20.231 -19.835 -8.564 0.111  -0.372 CL2 SO0 33 
SO0 H1  H1  H  0 1 N N N N N N -6.213  -15.213 -17.542 2.176  -5.634 -0.256 H1  SO0 34 
SO0 H2  H2  H  0 1 N N N N N N -5.100  -14.229 -18.551 0.453  -5.582 0.222  H2  SO0 35 
SO0 H3  H3  H  0 1 N N N N N N -6.495  -13.450 -16.110 0.943  -4.832 2.369  H3  SO0 36 
SO0 H4  H4  H  0 1 N N N N N N -5.347  -12.480 -17.095 2.537  -5.568 2.044  H4  SO0 37 
SO0 H5  H5  H  0 1 N N N N N N -8.446  -18.006 -18.573 -2.194 -1.320 -0.806 H5  SO0 38 
SO0 H6  H6  H  0 1 N N N N N N -9.615  -17.443 -19.815 -2.346 -1.429 0.964  H6  SO0 39 
SO0 H7  H7  H  0 1 N N N N N N -8.306  -15.541 -20.343 -0.822 -3.110 -0.526 H7  SO0 40 
SO0 H8  H8  H  0 1 N N N N N N -7.217  -16.296 -19.131 -0.262 -3.382 1.151  H8  SO0 41 
SO0 H9  H9  H  0 1 N N N N N N -8.852  -14.025 -16.703 2.043  -0.966 1.388  H9  SO0 42 
SO0 H10 H10 H  0 1 N N N N N N -6.764  -13.758 -20.097 1.351  -3.644 -1.449 H10 SO0 43 
SO0 H11 H11 H  0 1 N N N N N N -12.870 -12.552 -17.926 3.280  1.374  -2.130 H11 SO0 44 
SO0 H12 H12 H  0 1 N N N N N N -12.881 -13.237 -14.936 5.894  1.250  -0.563 H12 SO0 45 
SO0 H13 H13 H  0 1 N N N N N N -14.337 -12.769 -15.878 5.584  2.355  -1.923 H13 SO0 46 
SO0 H14 H14 H  0 1 N N N N N N -7.054  -11.378 -18.212 1.928  -2.777 2.462  H14 SO0 47 
SO0 H15 H15 H  0 1 N N N N N N -8.071  -11.910 -16.830 3.512  -3.507 2.086  H15 SO0 48 
SO0 H16 H16 H  0 1 N N N N N N -12.521 -15.137 -16.552 3.614  3.288  -0.660 H16 SO0 49 
SO0 H17 H17 H  0 1 N N N N N N -13.674 -14.936 -18.550 6.300  3.911  -0.264 H17 SO0 50 
SO0 H18 H18 H  0 1 N N N N N N -14.999 -13.974 -17.813 4.971  4.764  0.590  H18 SO0 51 
SO0 H19 H19 H  0 1 N N N N N N -16.179 -15.986 -17.835 6.771  2.533  1.583  H19 SO0 52 
SO0 H20 H20 H  0 1 N N N N N N -14.682 -16.965 -17.998 6.046  3.889  2.498  H20 SO0 53 
SO0 H21 H21 H  0 1 N N N N N N -8.726  -12.622 -19.363 3.354  -2.863 -0.183 H21 SO0 54 
SO0 H22 H22 H  0 1 N N N N N N -11.582 -20.811 -17.718 -4.113 -1.781 -0.105 H22 SO0 55 
SO0 H23 H23 H  0 1 N N N N N N -13.866 -21.490 -18.264 -6.561 -1.912 -0.323 H23 SO0 56 
SO0 H24 H24 H  0 1 N N N N N N -14.415 -17.889 -20.493 -6.817 2.340  -0.079 H24 SO0 57 
SO0 H25 H25 H  0 1 N N N N N N -12.101 -10.877 -15.482 4.052  -0.834 -3.046 H25 SO0 58 
SO0 H26 H26 H  0 1 N N N N N N -11.679 -10.459 -17.177 5.077  0.527  -3.561 H26 SO0 59 
SO0 H27 H27 H  0 1 N N N N N N -10.555 -12.862 -16.036 4.094  -0.154 0.221  H27 SO0 60 
SO0 H28 H28 H  0 1 N N N N N N -15.712 -17.020 -15.568 4.612  1.909  3.005  H28 SO0 61 
SO0 H29 H29 H  0 1 N N N N N N -13.631 -9.421  -16.455 6.375  -1.302 -2.740 H29 SO0 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SO0 CL1 C9  SING N N 1  
SO0 C7  C9  DOUB Y N 2  
SO0 C7  C6  SING Y N 3  
SO0 CL2 C6  SING N N 4  
SO0 C9  C3  SING Y N 5  
SO0 C6  C5  DOUB Y N 6  
SO0 C13 C16 SING N N 7  
SO0 C13 N13 SING N N 8  
SO0 C16 C34 SING N N 9  
SO0 C16 C1  SING N N 10 
SO0 O38 C15 DOUB N N 11 
SO0 C3  O1  SING N N 12 
SO0 C3  C4  DOUB Y N 13 
SO0 C11 O1  SING N N 14 
SO0 C11 C12 SING N N 15 
SO0 C5  C4  SING Y N 16 
SO0 C34 C14 SING N N 17 
SO0 C34 C2  SING N N 18 
SO0 N13 C12 SING N N 19 
SO0 N13 C14 SING N N 20 
SO0 C1  C10 SING N N 21 
SO0 C12 O33 DOUB N N 22 
SO0 C15 C14 SING N N 23 
SO0 C15 N16 SING N N 24 
SO0 C21 C22 SING N N 25 
SO0 C21 C20 SING N N 26 
SO0 C2  C10 SING N N 27 
SO0 C22 N23 SING N N 28 
SO0 C17 N16 SING N N 29 
SO0 C17 C8  SING N N 30 
SO0 C17 C19 SING N N 31 
SO0 O9  C8  SING N N 32 
SO0 C20 C19 SING N N 33 
SO0 C20 C24 SING N N 34 
SO0 N23 C24 SING N N 35 
SO0 C24 O26 DOUB N N 36 
SO0 C1  H1  SING N N 37 
SO0 C1  H2  SING N N 38 
SO0 C10 H3  SING N N 39 
SO0 C10 H4  SING N N 40 
SO0 C11 H5  SING N N 41 
SO0 C11 H6  SING N N 42 
SO0 C13 H7  SING N N 43 
SO0 C13 H8  SING N N 44 
SO0 C14 H9  SING N N 45 
SO0 C16 H10 SING N N 46 
SO0 C17 H11 SING N N 47 
SO0 C19 H12 SING N N 48 
SO0 C19 H13 SING N N 49 
SO0 C2  H14 SING N N 50 
SO0 C2  H15 SING N N 51 
SO0 C20 H16 SING N N 52 
SO0 C21 H17 SING N N 53 
SO0 C21 H18 SING N N 54 
SO0 C22 H19 SING N N 55 
SO0 C22 H20 SING N N 56 
SO0 C34 H21 SING N N 57 
SO0 C4  H22 SING N N 58 
SO0 C5  H23 SING N N 59 
SO0 C7  H24 SING N N 60 
SO0 C8  H25 SING N N 61 
SO0 C8  H26 SING N N 62 
SO0 N16 H27 SING N N 63 
SO0 N23 H28 SING N N 64 
SO0 O9  H29 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SO0 SMILES           ACDLabs              12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2CCCC2CN1C(=O)COc1ccc(Cl)cc1Cl"                                                                                                                                                                
SO0 InChI            InChI                1.06  "InChI=1S/C23H29Cl2N3O5/c24-15-4-5-19(18(25)9-15)33-12-20(30)28-10-14-2-1-3-17(14)21(28)23(32)27-16(11-29)8-13-6-7-26-22(13)31/h4-5,9,13-14,16-17,21,29H,1-3,6-8,10-12H2,(H,26,31)(H,27,32)/t13-,14-,16-,17-,21-/m0/s1" 
SO0 InChIKey         InChI                1.06  WFNOKGZUZOGKBO-ZEAPZOAHSA-N                                                                                                                                                                                             
SO0 SMILES_CANONICAL CACTVS               3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)COc4ccc(Cl)cc4Cl"                                                                                                                                          
SO0 SMILES           CACTVS               3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)COc4ccc(Cl)cc4Cl"                                                                                                                                                 
SO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1Cl)Cl)OCC(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO"                                                                                                                                      
SO0 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1Cl)Cl)OCC(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)CO"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SO0 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,3aR,6aS)-2-[(2,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide"                                                                          
SO0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},3~{a}~{S},6~{a}~{R})-2-[2-[2,4-bis(chloranyl)phenoxy]ethanoyl]-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SO0 "Create component" 2023-08-28 RCSB 
SO0 "Initial release"  2024-08-28 RCSB 
SO0 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SO0 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
