2025-04-09 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY REFINEMENT_DESCRIPTION database_2 em_3d_fitting_list em_admin pdbx_initial_refinement_model _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_3d_fitting_list em_admin pdbx_entry_details pdbx_initial_refinement_model pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_3d_fitting_list.accession_code _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBe PDBe 2019-10-07 2019-10-23 2020-03-04 2025-04-09 Max Planck Society Germany European Union 615984 Germany Cryo-EM structure of jasplakinolide-stabilized F-actin (aged) Pospich S Merino F Cytoskeleton, jasplakinolide, stabilized actin filament, STRUCTURAL PROTEIN Pospich S Merino F Raunser S Structural Effects and Functional Implications of Phalloidin and Jasplakinolide Binding to Actin Filaments. Structure UK 28 437 449.e5 2020 32084355 doi:10.1016/j.str.2020.01.014 0969-2126 2005 STRUE6 EMD-3836 other EM volume
Cryo-EM structure of JASP-stabilized F-actin complexed with ADP
 EMD-3837 other EM volume
Cryo-EM structure of JASP-stabilized F-actin complexed with ADP-Pi
 EMD-10363 other EM volume
Cryo-EM structure of phalloidin-stabilized F-actin (copolymerized)
 EMD-10364 other EM volume
Cryo-EM structure of phalloidin-stabilized F-actin (aged)
 EMD-10365 other EM volume
Cryo-EM structure of jasplakinolide-stabilized F-actin (aged)
 EMD-10367 other EM volume
Cryo-EM structure of phalloidin-Alexa Flour-546-stabilized F-actin (copolymerized)
 6t24 FULLOVERLAP Filamentous jasplakinolide-stabilized alpha actin in complex with ADP-Pi Filamentous jasplakinolide-stabilized alpha actin in complex with ADP-Pi 0 1 Oryctolagus cuniculus skeletal muscle Actin, alpha skeletal muscle Oryctolagus cuniculus skeletal muscle 0.041875633 5 LEVO DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE(HIC)GII TNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSG DGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL EKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKE ITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF P68135 ADENOSINE-5'-DIPHOSPHATE 0.000427201 5 ADP PHOSPHATE ION 9.4971e-05 5 PO4 MAGNESIUM ION 2.4305e-05 5 MG (4~{R},7~{R},10~{S},13~{S},15~{E},19~{S})-10-(4-azanylbutyl)-4-(4-hydroxyphenyl)-7-(1~{H}-indol-3-ylmethyl)-8,13,15,19-tetramethyl-1-oxa-5,8,11-triazacyclononadec-15-ene-2,6,9,12-tetrone 0.000673841 5 9ZK singleParticle filament 7.5 5.0 C4H11NO3 TRIS 2.0 NaN3 Sodium azide 1.0 C4H10O2S2 DTT 100.0 KCl Potassium chloride 2.0 MgCl2 Magnesium chloride 0.5 C2H6OS Dimethyl sulfoxide 0.02 C58H114O26 Tween 20
5 mM Tris pH 7.5, 2 mM NaN3, 1 mM DTT, 100 mM KCl and 2 mM MgCl2, 0.5 %(v/v) DMSO, 0.02 %(v/w) Tween 20
 Quantifoil R2/1 COPPER 300 CARBON HOLEY GLOW DISCHARGE ETHANE 100 286 FEI VITROBOT MARK IV
Rise 27.6 A, Twist -166.8 degrees
 FEI TITAN KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 0.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN Cs-corrected microscope
Cs-corrected microscope
FEI FALCON III (4k x 4k) INTEGRATING 1-8 1 5335 2.1 88.0 1 1237583 Initial model was generated from PDB 5JLF and filtered to 25 A using SPARX. C1 BACK PROJECTION 3.7 FSC 0.143 CUT-OFF RELION 2-beta 352285 PROJECTION MATCHING RELION 2-beta PROJECTION MATCHING RELION 2-beta emd_10366.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 286.72 286.72 286.72 90.0 90.0 90.0 X Y Z -0.27077246 0.8449304 0.00096088386 0.011516797 1.12 1.12 1.12 0.07 AUTHOR Map of the full filament filtered to local resolution 6T23 C PDB experimental model OTHER REAL emd_10366_msk_1.map emd_10366_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 286.72 286.72 286.72 90.0 90.0 90.0 X Y Z -0.013164322 0.052599315 0.000056193858 0.00325231 1.12 1.12 1.12 AUTHOR Half map 1 emd_10366_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 286.72 286.72 286.72 90.0 90.0 90.0 X Y Z -0.011556815 0.05244562 0.000057740475 0.003235044 1.12 1.12 1.12 AUTHOR Half map 2