<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-1018" version="3.0.1.1" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_1_1/emdb_relaxed.xsd">
   <admin>
      <current_status>
         <code>REL</code>
         <processing_site>PDBe</processing_site>
      </current_status>
      <sites>
         <deposition>PDBe</deposition>
         <last_processing>PDBe</last_processing>
      </sites>
      <key_dates>
         <deposition>2002-12-12</deposition>
         <header_release>2003-01-06</header_release>
         <map_release>2003-01-06</map_release>
         <update>2012-10-17</update>
      </key_dates>
      <title>The first step: activation of the Semliki Forest virus spike protein precursor causes a localized conformational change in the trimeric spike.</title>
      <authors_list>
         <author>Fuller SD</author>
      </authors_list>
      <keywords>
         </keywords>
   </admin>
   <crossreferences>
      <citation_list>
         <primary_citation>
            <journal_citation published="true">
               <author order="1">Ferlenghi I</author>
               <author order="2">Gowen B</author>
               <author order="3">de Haas F</author>
               <author order="4">Mancini EJ</author>
               <author order="5">Garoff H</author>
               <author order="6">Sjoberg M</author>
               <author order="7">Fuller SD</author>
               <title>The first step: activation of the Semliki Forest virus spike protein precursor causes a localized conformational change in the trimeric spike.</title>
               <journal>J.MOL.BIOL.</journal>
               <volume>283</volume>
               <first_page>71</first_page>
               <last_page>81</last_page>
               <year>1998</year>
               <external_references type="PUBMED">9761674</external_references>
               <external_references type="DOI">doi:10.1006/jmbi.1998.2066</external_references>
            </journal_citation>
         </primary_citation>
      </citation_list>
   </crossreferences>
   <sample>
      <name>Semliki forest mSQL</name>
      <supramolecule_list>
         <sample_supramolecule supramolecule_id="1000">
            <name>Semliki forest mSQL</name>
            <number_unique_components>1</number_unique_components>
         </sample_supramolecule>
         <virus_supramolecule supramolecule_id="1">
            <name synonym="semliki forest m SQL">Semliki forest virus</name>
            <details>mSQL mutation.</details>
            <sci_species_name ncbi="11033">Semliki forest virus</sci_species_name>
            <natural_host database="NCBI">
               <organism>baby hamster kidney 21 cells</organism>
               <synonym_organism>VERTEBRATES</synonym_organism>
            </natural_host>
            <host_system database="NCBI">
               </host_system>
            <virus_shell shell_id="1">
               <name>envelope</name>
               <triangulation>4</triangulation>
            </virus_shell>
            <virus_shell shell_id="2">
               <name>nucleo capsid</name>
               <triangulation>4</triangulation>
            </virus_shell>
            <virus_type>VIRION</virus_type>
            <virus_isolate>STRAIN</virus_isolate>
            <virus_enveloped>true</virus_enveloped>
            <virus_empty>false</virus_empty>
            <syn_species_name>semliki forest m SQL</syn_species_name>
         </virus_supramolecule>
      </supramolecule_list>
   </sample>
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         <method>singleParticle</method>
         <aggregation_state>particle</aggregation_state>
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               <concentration units="mg/mL">3</concentration>
               <buffer>
                  <ph>7.4</ph>
                  <details>tris(10mM) NaCL (100mM) ph 7.4</details>
               </buffer>
               <vitrification>
                  <cryogen_name>ETHANE</cryogen_name>
                  <chamber_humidity units="percentage">100</chamber_humidity>
                  <chamber_temperature units="K">37</chamber_temperature>
                  <instrument>HOMEMADE PLUNGER</instrument>
                  <details>Vitrification instrument: EMBL plunger with warm humid air spray</details>
                  <method>blot for 2 sec Graticule grids were used to maintain</method>
               </vitrification>
            </single_particle_preparation>
         </specimen_preparation_list>
         <microscopy_list>
            <single_particle_microscopy microscopy_id="1">
               <microscope>FEI/PHILIPS CM200FEG/ST</microscope>
               <illumination_mode>FLOOD BEAM</illumination_mode>
               <imaging_mode>BRIGHT FIELD</imaging_mode>
               <electron_source>FIELD EMISSION GUN</electron_source>
               <acceleration_voltage units="kV">200</acceleration_voltage>
               <nominal_cs units="mm">2</nominal_cs>
               <nominal_defocus_min units="&#181;m">0.975</nominal_defocus_min>
               <nominal_defocus_max units="&#181;m">7.628</nominal_defocus_max>
               <nominal_magnification>50000.0</nominal_magnification>
               <specimen_holder_model>GATAN LIQUID NITROGEN</specimen_holder_model>
               <temperature>
                  <temperature_average units="K">105</temperature_average>
               </temperature>
               <image_recording_list>
                  <image_recording>
                     <film_or_detector_model category="FILM">KODAK SO-163 FILM</film_or_detector_model>
                     <digitization_details>
                        <scanner>PERKIN ELMER</scanner>
                        <sampling_interval units="&#181;m">20</sampling_interval>
                     </digitization_details>
                     <average_electron_dose_per_image units="e/&#8491;^2">8</average_electron_dose_per_image>
                     <detector_distance>44</detector_distance>
                     <od_range>1.0</od_range>
                     <bits_per_pixel>8.</bits_per_pixel>
                  </image_recording>
               </image_recording_list>
               <specimen_holder>eucentric</specimen_holder>
            </single_particle_microscopy>
         </microscopy_list>
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            <ctf_correction>
               <details>ctf multiplication and summation of normalized reconstructions</details>
            </ctf_correction>
            <final_reconstruction>
               <applied_symmetry>
                  <point_group>I</point_group>
               </applied_symmetry>
               <algorithm>OTHER</algorithm>
               <resolution res_type="BY AUTHOR" units="&#8491;">9.0</resolution>
               <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
               <software_list>
                  <software>
                     <name>EMBL</name>
                  </software>
               </software_list>
               <number_images_used>62</number_images_used>
            </final_reconstruction>
            <final_angle_assignment>
               <details>sufficient to give maximum inverse eigen value
        of 0.1</details>
            </final_angle_assignment>
         </singleparticle_processing>
      </structure_determination>
   </structure_determination_list>
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      <file>emd_1018.map.gz</file>
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      </symmetry>
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         <row>256</row>
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         <fast>X</fast>
         <medium>Y</medium>
         <slow>Z</slow>
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         <minimum>-6796.0</minimum>
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      <contour_list>
         <contour primary="true">
            <level>992.0</level>
         </contour>
      </contour_list>
      <annotation_details>Semliki forest virus</annotation_details>
      <details>::::EMDATABANK.org::::EMD-1018::::</details>
   </map>
</emd>