2019-09-25 REL PDBe PDBe PDBe 2019-08-03 2019-09-25 2019-09-25 2019-09-25 Swiss National Science Foundation Switzerland mt-SSU assemblosome of wild-type Trypanosoma brucei brucei Saurer M Ramrath D Niemann M Calderaro S Prange C Mattei S Scaiola A Leitner A Bieri P Horn EK Leibundgut M Schneider A Boehringer D Ban N Saurer M Ramrath DJF Niemann M Calderaro S Prange C Mattei S Scaiola A Leitner A Bieri P Horn EK Leibundgut M Boehringer D Schneider A Ban N Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science US 365 1144 1149 2019 31515389 doi:10.1126/science.aaw5570 1095-9203 0038 SCIEAS EMD-10176 associated EM volume wild-type mt-SSU assemblosome wild-type mt-SSU assemblosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 Trypanosoma brucei brucei Lister strain 427 singleParticle particle 7.4 Quantifoil R2/2 COPPER 300 CARBON CONTINUOUS GLOW DISCHARGE AIR
15 mA
 ETHANE-PROPANE 100 277 FEI VITROBOT MARK IV
Mitochondrial ribosomal small subunit assemblosome of wild-type Trypanosoma brucei brucei Lister strain 427
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 100.0 2.7 1.0 4.5 75000. 129032. FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) INTEGRATING 14.0 1 13503 1.5 75.0
Images were collected in movie-mode at 40 frames per second
 1 1243432 Gctf 1.06
On the fly in RELION
The starting model was determined ab-initio using RELION 3D initial model routine based on SGD.
 C1 4.0 FSC 0.143 CUT-OFF RELION 3.0.5 28663 MAXIMUM LIKELIHOOD RELION 3.0.5 MAXIMUM LIKELIHOOD RELION 3.0.5 emd_10176.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 340 340 340 0 0 0 340 340 340 520.812 520.812 520.812 90.0 90.0 90.0 X Y Z -0.14604793 0.32192507 0.0009849102 0.008526604 1.5318 1.5318 1.5318 0.05 AUTHOR mt-SSU assemblosome of wild-type Trypanosoma brucei brucei OTHER
Starting models of ribosomal proteins of the T. brucei mitochondrial ribosomal small subunit were taken from PDB 6HIW. Mitchondrial ribosomal small subunit assembly factors were built de novo.