REL PDBe PDBe PDBe 2002-10-10 2002-10-11 2002-10-11 2016-06-29 Cryo-electron microscopy reveals the functional organization of an enveloped virus, Semliki Forest virus. Mancini EJ Clarke M Gowen B Rutten T Fuller SD Mancini EJ Clarke M Gowen BE Rutten T Fuller SD Cryo-electron microscopy reveals the functional organization of an enveloped virus, Semliki Forest virus. MOLECULAR CELL 5 255 266 2000 10882067 1dyl FULLOVERLAP Semliki Forest Virus Semliki Forest Virus T=4 membraneous particle 1 50 theoretical Semliki forest virus Semliki forest virus baby hamster kidney 21 cells VERTEBRATES envelope 4 nucleocapsid 4 VIRION STRAIN true false SFV singleParticle particle 3 7.4
Tris (10mM) NaCl (100 mM) ph 7.4
 ETHANE 100 37 HOMEMADE PLUNGER
Vitrification instrument: EMBL plunger with warm humid air spray. plunging at ambient temperature and humidity
Blot for 2 sec Graticule grids were used to maintain flatness FEI/PHILIPS CM200FEG/ST FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2 0.975 7.628 50000.0 GATAN LIQUID NITROGEN 105 1995-01-01 KODAK SO-163 FILM ZEISS SCAI 7 48 8 44 1.0 8. eucentric
ctf multiplication and summation of normalized reconstructions
 I OTHER 9.0 OTHER EMBL-ICOS
final maps were calculated by making a normalized sum of seperate ctf multiplied maps: Baker, T. S., Olson, N. H., and Fuller, S. D. (1999). Adding the third dimension to virus life cycles: Three-Dimensional Reconstruction of Icosahedral Viruses from Cryo-Electron Micrographs. Microbiology and Molecular Biology Reviews 63, 862-922. Fuller, S. D., Butcher, S. J., Cheng, R. H., and Baker, T. S. (1996). Three-dimensional reconstruction of icosahedral particles-the uncommon line. J Struct Biol 116, 48-55. Mancini, E. J., Clarke, M., Gowen, B., Rutten, T., and Fuller, S. D. (2000). Cryo-electron microscopy reveals the functional organization of an enveloped virus, Semliki Forest virus. Molecular Cell 5, 255-266. Mancini, E. J., de Haas, F., and Fuller, S. D. (1997). High-resolution icosahedral reconstruction: fulfilling the promise of cryo-electron microscopy. Structure 5, 741-750.
6000
sufficient to give maximum inverse eigenvalue of 0.1
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::::EMDATABANK.org::::EMD-1015::::
 1DYL A B C D RIGID BODY FIT emfit (Cheng et al 1995)
Protocol: rigid body. The capsid protein used for the rigid body refinement was PDB entry 1VCQ
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Created by IMAGIC: MRC image = /ebi/msd/emdeposit/submissions/EMD-1240/UP/tempCC P4/m 10-10-20 19:11:48
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Created by IMAGIC: MRC image = /ebi/msd/emdeposit/submissions/EMD-1240/UP/tempCC P4/m 10-10-20 19:12:42