2024-10-16 REL PDBe PDBe PDBe 2019-07-16 2019-09-18 2019-09-18 2024-10-16 Cryo-EM structure of TMV in water Weis F Beckers M TMV, virus assembly/disassembly, Ca2+ switch, Caspar carboxylates, VIRUS Weis F Beckers M von der Hocht I Sachse C Elucidation of the viral disassembly switch of tobacco mosaic virus. Embo Rep. UK 20 e48451 e48451 2019 31535454 doi:10.15252/embr.201948451 1469-3178 6sae FULLOVERLAP Tobacco mosaic virus (strain vulgare) Tobacco mosaic virus (strain vulgare) 0 1 2 Tobacco mosaic virus (strain vulgare) Nicotiana tabacum VIRION STRAIN false false Capsid protein Tobacco mosaic virus (strain vulgare) vulgare 0.017531463
Residues 154-158 are flexible and were not modelled.
1 LEVO (ACE)SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAV LDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSG PAT P69687 RNA (5'-R(P*GP*AP*A)-3') Tobacco mosaic virus (vulgare) 0.00095866 1 GAA MAGNESIUM ION 2.4305e-05 4 MG water 1.8015e-05 92 HOH helical helicalArray 22 7.0
pure water
 C-flat-2/2 COPPER 300 CARBON HOLEY ARRAY GLOW DISCHARGE
Pelco Easyglow, factory settings
 ETHANE 100 283.15 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.15 0.35000000000000003 215000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 QUANTUM (4k x 4k) SUPER-RESOLUTION 1-20 1 62 5.0 30.8 1 1.406 22.038 C1 BACK PROJECTION 1.9 FSC 0.143 CUT-OFF RELION 3 21598 21709 SPRING 4UDV NOT APPLICABLE RELION 3 emd_10129.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 486 486 486 0 0 0 486 486 486 310.068 310.068 310.068 90.0 90.0 90.0 X Y Z -0.069113284 0.1624072 0.000015625179 0.007037313 0.638 0.638 0.638 0.02 AUTHOR B-factor sharpened and locally filtered 4UDV PDB experimental model emd_10129_msk_1.map emd_10129_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 486 486 486 0 0 0 486 486 486 310.068 310.068 310.068 90.0 90.0 90.0 X Y Z 0.0 1.0 0.049468204 0.21242873 0.638 0.638 0.638 AUTHOR Confidence map emd_10129_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 486 486 486 0 0 0 486 486 486 310.068 310.068 310.068 90.0 90.0 90.0 X Y Z -0.023712907 0.06131019 0.000017960276 0.0038615467 0.638 0.638 0.638 AUTHOR Halfmap 2 emd_10129_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 486 486 486 0 0 0 486 486 486 310.068 310.068 310.068 90.0 90.0 90.0 X Y Z -0.023482626 0.060899176 0.0000147855035 0.0038897695 0.638 0.638 0.638 AUTHOR Halfmap 1