2024-05-22 REL PDBe PDBe PDBe 2019-07-04 2019-07-17 2020-03-18 2024-05-22 Structure of beta-Galactosidase from Thermotoga maritima Miguez-Amil S Jimenez-Ortega E BETA-GALACTOSIDASE, CARBOHYDRATE, GLUCOSYL HYDROLASE, THERMOTOGA MARITIMA, TRANSGLYCOSYLATION, IMMOBILIZATION, CRYOEM, GRAPHENE-OXIDE, GALACTOOLIGOSACCHARIDES, HYDROLASE Miguez Amil S Jimenez-Ortega E Ramirez-Escudero M Talens-Perales D Marin-Navarro J Polaina J Sanz-Aparicio J Fernandez-Leiro R The cryo-EM Structure ofThermotoga maritimabeta-Galactosidase: Quaternary Structure Guides Protein Engineering. Acs Chem.Biol. US 15 179 188 2020 31874027 doi:10.1021/acschembio.9b00752 1554-8937 6s6z FULLOVERLAP Map of beta-Galactosidase from Thermotoga maritima Map of beta-Galactosidase from Thermotoga maritima 0 1
Map from Relion3: Refined 3D after postprocessing using the deposited mask and automatic filtering/sharpening. Sharpened by LocScale
Thermotoga maritima MSB8 1.02 Beta-galactosidase Thermotoga maritima MSB8 0.127653539 8 Escherichia coli LEVO PYEWENPQLVSEGTEKSHASFIPYLDPFSGEWEYPEEFISLNGNWRFLFAKNPFEVPEDFFSEKFDDSNWDEIEVPSNWE MKGYGKPIYTNVVYPFEPNPPFVPKDDNPTGVYRRWIEIPEDWFKKEIFLHFEGVRSFFYLWVNGKKIGFSKDSCTPAEF RLTDVLRPGKNLITVEVLKWSDGSYLEDQDMWWFAGIYRDVYLYALPKFHIRDVFVRTDLDENYRNGKIFLDVEMRNLGE EEEKDLEVTLITPDGDEKTLVKETVKPEDRVLSFAFDVKDPKKWSAETPHLYVLKLKLGEDEKKVNFGFRKIEIKDGTLL FNGKPLYIKGVNRHEFDPDRGHAVTVERMIQDIKLMKQHNINTVRTSHYPNQTKWYDLCDYFGLYVIDEANIESHGIDWD PEVTLANRWEWEKAHFDRIKRMVERDKNHPSIIFWSLGNEAGDGVNFEKAALWIKKRDNTRLIHYEGTTRRGESYYVDVF SLMYPKMDILLEYASKKREKPFIMCEYAHAMGNSVGNLKDYWDVIEKYPYLHGGCIWDWVDQGIRKKDENGREFWAYGGD FGDTPNDGNFCINGVVLPDRTPEPELYEVKKVYQNVKIRQVSKDTYEVENRYLFTNLEMFDGAWKIRKDGEVIEEKTFKI FAEPGEKRLLKIPLPEMDDSEYFLEISFSLSEDTPWAEKGHVVAWEQFLLKAPAFEKKSISDGVSLREDGKHLTVEAKDT VYVFSKLTGLLEQILHRRKKILKSPVVPNFWRVPTDNDIGNRMPQRLAIWKRASKERKLFKMHWKKEENRVSVHSVFQLP GNSWVYTTYTVFGNGDVLVDLSLIPAEDVPEIPRIGFQFTVPEEFGTVEWYGRGPHETYWDRKESGLFARYRKAVGEMMH RYVRPQETGNRSDVRWFALSDGETKLFVSGMPQIDFSVWPFSMEDLERVQHISELPERDFVTVNVDFRQMGLGGDDSWGA MPHLEYRLLPKPYRFSFRMRISEEIPSWRVLAAIPETLHVEMSSEDVIREGDTLRVKFSLLNDTPLSKEKQVVLFVDGNE YSVRRVVIPPFKKEELVFKVEGLKKGEHLIHTNLNTRKTIYVR Q56307 3.2.1.23 MAGNESIUM ION 2.4305e-05 8 MG water 1.8015e-05 1384 HOH singleParticle particle 0.03 6.0 50.0 NaH2PO4 Sodium Phosphate Buffer 50.0 NaCl Sodium Chloryde 2.0 C4H10O2S2 Dithiothreitol Quantifoil R2/2 COPPER 400 GRAPHENE OXIDE HOLEY GLOW DISCHARGE AIR 30.0 ETHANE 90 277.15 FEI VITROBOT MARK II FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.0 0.4 2.0 2.6 120000.0 20895.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 4096 4096 1 3600 25.0 35.0 1 229079 SGD in relion3.0 1 D4 FOURIER SPACE 2.0 FSC 0.143 CUT-OFF RELION 3.0
Standard CTF correction inside RELION's reconstruction
154632 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 RELION 3.0 emd_10109.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 343.04 343.04 343.04 90.0 90.0 90.0 X Y Z -0.21666068 1.0043567 0.0063757556 0.041183587 0.67 0.67 0.67 0.2 AUTHOR Map from Relion3 Refine3D after postprocessing using the deposited mask and automatic filtering/sharpening, and sharpened with LocScale OTHER RECIPROCAL emd_10109_msk_1.map emd_10109_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 340.992 340.992 340.992 90.0 90.0 90.0 X Y Z -0.02399328 0.07666768 -0.00019214953 0.0038236184 0.666 0.666 0.666 AUTHOR Half map 2 from Relion3 emd_10109_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 340.992 340.992 340.992 90.0 90.0 90.0 X Y Z -0.023017941 0.07865538 -0.00019124463 0.003820844 0.666 0.666 0.666 AUTHOR Half map 2 from Relion3