2024-11-20 REL PDBe PDBe PDBe 2019-07-02 2020-07-08 2020-07-08 2024-11-20 Novo Nordisk Foundation NNF14CC0001 Denmark Novo Nordisk Foundation NNF0024386 Denmark Novo Nordisk Foundation NNF17SA0030214 Denmark Type III-B Cmr-beta Cryo-EM structure of the Apo state Sofos N Montoya G CRISPR-Cas, Effector complex, nuclease, cyclic oligo-adenylate synthase, ANTIVIRAL PROTEIN Sofos N Feng M Stella S Pape T Fuglsang A Lin J Huang Q Li Y She Q Montoya G Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas. Mol.Cell US 79 741 757.e7 2020 32730741 doi:10.1016/j.molcel.2020.07.008 1097-2765 2168 MOCEFL Sofos N Feng M Stella S Pape T Fuglsang A Lin J Huang Q Li Y She Q Montoya G Structures of the Cmr-beta Complex Reveal the Regulation of the Immunity Mechanism of Type III-B CRISPR-Cas Biorxiv US 2020 doi:10.1101/2020.06.24.163345 2692-8205 6s6b FULLOVERLAP Type III-B Cmr-beta binary complex, crRNA-bound Type III-B Cmr-beta binary complex, crRNA-bound 0 1 2 3 4 5 6 7 8
Cmr7 part of the complex
Sulfolobus islandicus REY15A 0.9 CRISPR-associated protein, Cmr5 family Sulfolobus islandicus (strain REY15A) 0.017961834 3 LEVO MLYEEDYKLALEAFKKVFNALTHYGAKQAFRSRARDLVEEIYNSGFIPTFFYIISKAELNSDSLDSLISLFSSDNAILRG SDENVSYSAYLFIILYYLIKRGIIEQKFLIQALRCEKTRLDLIDKLYNLAPIISAKIRTYLLAIKRLSEALIEAR F0NDX5 CRISPR-associated RAMP protein, Cmr4 family Sulfolobus islandicus (strain REY15A) 0.032366371 4 LEVO MPYYAFAEPFFIHAITHLHVGSGSSVEEEIDLPFQRDELGYPTIYASSLKGAIKSFLLKEFPDKRDVIYKVLGEDENPEE ASLGTFLDAILFAIPSRIIEIDSAKPYVWVYVTTYELLKKVKLYLDSISQLSNASFSNLKNKIDTILAKEGKNITLDSDL KSAILNEDFYVELEALNNKIPSIINAGVPLLVLEDSIGREVINRSLIRVRRIRIDRDKKVVETGGLWSEEYVPMKTIFFS VLLGKESKESAIFASCILRNLRYVILGGKETIGKGIVELRWVKDVI F0NDX6 CRISPR-associated protein, Cmr3 family Sulfolobus islandicus (strain REY15A) 0.036008546999999995 1 LEVO MKRVLIKPLEPLMFRSQGEFEPLITGSHTAAQSLIIPRPSTIAGMLGYILFNKSSGTGDWLSDLTNLLATIYGTFIETNG EYLFPLRMGNHLALVDQQHLINLPTLLEKEYERREKGIYELFYDKNKLFQIINHQDRIGISIDKSTRTVKEHYLYSARYL AFKKEVNYVIFIDNDAISDKINGKIVNFGGENRIAKLEVDDYKVDTSIEEEYYLALSPILIPDEALDNFLDNISDYVAMG KVDKISLGFDIANTKRKEMLTAILEGSIVKRSIIDFIKNEIKNDLRYRFSKYEKIGYNTLMSLCKLALRKILS F0NDX1 CRISPR-associated RAMP protein, Cmr6 family Sulfolobus islandicus (strain REY15A) REY15A 0.033945913999999994
C-terminally histidine-tagged
1 Sulfolobus islandicus (strain REY15A) LEVO MAIDFLVNILELIKEKQCNINLFSAISLTSIVYNNFGEFLSNNQSYSTNNPLLKYHIIILNDKNKTKDVEEKRNIFKREV AELISRNFKLDGEKVRNYFDSLKEVLKSLKYTIVDVEITTRTRALIGVSTSLGKLIFGSGISFDPYMNLPYIPASEIKGI VRSYIEGKLGEQEAEEIFGNEEREGNVNFTDAYPTRSKDFLFVPDVITPHYNGKKSEADAEPRPVIHLTIAPKVTFRFLI YYKREDVGKPICDSMPIILIRGLGARSSVGYSLFELRKIEVIKAAAHHHHHHHHHH F0NDX3 Cmr1 Sulfolobus islandicus REY15A 0.05538896499999999 1 LEVO MEELLMSLKLKALYPLTGGYNRHSINPFYEELVRPTEIKGLWRWWNRVLFNTLAYSTKGKLYTYESIDRLFEDVFGSENK KSAVRLEVITDEGNDNRFELSYVELDKVIDCLRNYKRKVSLDFIDNTLIAEIEGSTKIPISFKSNLDIDKIIKDLVHNNK LLSFELLGFKSVEIDATKISDKKILKEILRDLITNYLEYFNIKQEVTFTLNIYLDKSREHKQNFEDKLKFALYSLLVFIL LGGIGRKTSRGFGSLSIIDVKCYDNSICKKIEDLAKNFLKISSGNELKSKIESILDCIKNSCIDTLYIENNILSEIDPKK NVVYFINSDLFEVKRINDKEKVLANIYKAVSSEGCCIKSIITDKYVRKSFLIAFGGYRKVEKDKGLDIGFIKNYLCETCE TVSSFNIVDFLLSEGSFMSDYILQYEHRNSLLRFKLISDNSNNSYLIGYILHSSYFKKIDIKYVRCILEKLTYCVI CRISPR-associated protein, Cmr2 family Sulfolobus islandicus (strain REY15A) 0.12085645299999999 1 LEVO MSIDNVLREFLDYKIIALLHDPPNKAWVITGRARNLTQQLSNIRASRKHEKVAKYIINQLFGKNYSEKVDNADKLASSID RYLGSIVYKERSLFENRSIFLKNILLSNIQRDIGNLFPKDKSKLDNLILEYKKLLNVINKTNLILKYQLFYLIYELVWID SKYENTPSDTRNPTHTIFDHLYATAAMMNWILSLEKEAKGYLLGIDTIGVADFISKGRKTRDLWISSYLVSALLWYVITW FIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEGVSEDVIDEIKELITKYIFNGDDLFENLKIPPYPIIPGRITLILPGLI REGEEYKKVQDDNCFISKVKERYNEGWRKLIEGLRCYSERKREDGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTEDEI FNNNKLRSDSWKIYDNKYRQLVSEFKKSKLVKVTPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVVIMPKED ELEKKLIDLGIARDEKDVRSIKNMISPGERLCPWCLVKRALGAEPRLMRILLLGDLYSVEKIVNEIVSRDVKIEIPSTSD IASIKTFEEMIEKKNEICEDLKEEEVCEKPSESVLSMWQWFNKNYYNGINLTIDPEEYWFSEKRRRYYFSVFRRHRITFP SPYYALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGSIVDYVKTVLKCIRENLNKCS CAEKIYSNEVAKVMFRVNVEKANVEEEVKNSLEYFETILNEGRIIVTPAWHVSISSALNRGLLVELELVNKHKGFVIYAG GDDLLAMLPVDEVLDFIKESRRAFAGFGTEKLGNMCLENGFVRINNAYYPSLPIVGRSYSVIIAHYADPLFFVINDSYNL LEEGKEIIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKRPIVSSVSDFNEIASIIDVILELKKRIDEGRISVSLLY DYEKYKHLIVASDEKYLTEFLVKDWIKRNSLRKHVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK F0NDX2 crRNA (51-mer) Sulfolobus islandicus REY15A 0.016409871 1 AUUGAAAGUUCAAAGCUUAGAUACCCUGGAGGGAAACCAGACUUAACACCA CRISPR-associated protein Cmrx Sulfolobus islandicus (strain REY15A) 0.019705607 26 LEVO MSTQREYVFIPITNSITIDVKITIGGSDHITNIDERGIHNVLVITGYAVDEKNGRLVPTLDPCDYVKGILVAGTPQQAQS NDFLTLKLPANKLYLIRKKGNISDDLKIYIPYSSPDARNSMKTKPVSISDDTIVNNIIKEVFDKIYNITQKEKVKIEKVK EDIKELFSYYALEQ F0NDX7 ZINC ION 6.5409e-05 1 ZN singleParticle particle 0.8 8.0 0.15 NaCl sodium chloride 0.01 Tris-HCl Quantifoil, UltrAuFoil GOLD 300 GLOW DISCHARGE AIR
Leica EM ACE200
 ETHANE 100 277 FEI VITROBOT MARK IV
3-4 s blotting before plunging.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.1 1.7 2.6 96000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) COUNTING 1 2792 40.0 40.0 1 614000
Model generated ab initio with cisTEM using a dataset of a similar sample.
 1 C1 2.75 FSC 0.143 CUT-OFF cisTEM 1.0 beta 69043 MAXIMUM LIKELIHOOD RELION 3.0 beta MAXIMUM LIKELIHOOD cisTEM 1.0 beta 3 32000.0 cisTEM 1.0 beta emd_10102.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 416.00003 415.99997 416.0 90.0 90.0 90.0 X Y Z -11.327906 23.335685999999999 0.0035287677 0.60918933 0.8320001 0.83199996 0.832 2.5 AUTHOR AB INITIO MODEL Cross-correlation coefficient REAL emd_10102_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 294 203 180 109 148 156 180 203 294 149.76001 168.896 244.608 90.0 90.0 90.0 Z Y X -14.788421 34.511479999999999 0.31147203 2.5182765 0.8320001 0.83199996 0.832 AUTHOR Model-sharpened and boxed out map emd_10102_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -9.256907999999999 16.318881999999999 -0.0046017687 0.57049125 0.832 0.832 0.832 AUTHOR emd_10102_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 416.0 416.0 416.0 90.0 90.0 90.0 X Y Z -8.817515999999999 15.637146 -0.00409253 0.56797606 0.832 0.832 0.832 AUTHOR