Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3

2024-04-24 REL PDBe PDBe PDBe 2019-06-03 2020-06-03 2020-06-03 2024-04-24 Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 Itoh Y Khawaja A ribosomal small subunit, initiation complex, initiation factor 3, mitochondria, RIBOSOME Khawaja A Itoh Y Remes C Spahr H Yukhnovets O Hofig H Amunts A Rorbach J Distinct pre-initiation steps in human mitochondrial translation. Nat Commun UK 11 2932 2932 2020 32522994 doi:10.1038/s41467-020-16503-2 2041-1723 6rw4 FULLOVERLAP IF3 bound mitochondrial translation pre-initiation complex IF3 bound mitochondrial translation pre-initiation complex 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32

Small subunit of mitochondrial ribosome in complex with mitochondrial IF3

1.1 Ribosome 1 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 Homo sapiens IF3 1 32 Homo sapiens 12S mitochondrial rRNA Homo sapiens 0.306547531 1 AAUAGGUUUGGUCCUAGCCUUUCUAUUAGCUCUUAGUAAGAUUACACAUGCAAGCAUCCCCGUUCCAGUGAGUUCACCCU CUAAAUCACCACGAUCAAAAGGGACAAGCAUCAAGCACGCAGCAAUGCAGCUCAAAACGCUUAGCCUAGCCACACCCCCA CGGGAAACAGCAGUGAUUAACCUUUAGCAAUAAACGAAAGUUUAACUAAGCUAUACUAACCCCAGGGUUGGUCAAUUUCG UGCCAGCCACCGCGGUCACACGAUUAACCCAAGUCAAUAGAAGCCGGCGUAAAGAGUGUUUUAGAUCACCCCCUCCCCAA UAAAGCUAAAACUCACCUGAGUUGUAAAAAACUCCAGUUGACACAAAAUAGACUACGAAAGUGGCUUUAACAUAUCUGAA CACACAAUAGCUAAGACCCAAACUGGGA(5MU)UAGAUACCCCACUAUGCUUAGCCCUAAACCUCAACAGUUAAAUCAAC AAAACUGCUCGCCAGAACACUACGAGCCACAGCUUAAAACUCAAAGGACCUGGCGGUGCUUCAUAUCCCUCUAGAGGAGC CUGUUCUGUAAUCGAUAAACCCCGAUCAACCUCACCACCUCUUGCUCAGCCUAUAUACCGCCAUCUUCAGCAAACCCUGA UGAAGGCUACAAAGUAAGCGCAAGUACCCACGUAAAGACGUUAGGUCAAGGUGUAGCCCAUGAGGUGGCAAGAAAUGGGC UACAUUUUCUACCCCAGAAAACUACGAUAGCCCUUAUGAAACUUAAGGGUCGAAGGUGGAUUUAGCAGUAAACUGAGAGU AGAGUGCUUAGUUGAACAGGGCCCUGAAGCGCGUACACACCG(B8T)C(5MC)GUCACCCUCCUCAAGUAUACUUCAAAG GACAUUUAACUAAAACCCCUACGCAUUUAUAUAGAGGAGACAAGUCGUAACAUGGUAAGUGUACUGG(MA6)(MA6)AGU GCACUUGGACGAACC 28S ribosomal protein S2, mitochondrial Homo sapiens 0.033298237999999994 1 LEVO MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFNDKILNEPLKHSDFFNVKELFS VRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMAR DCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGND DSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL Q9Y399 28S ribosomal protein S24, mitochondrial Homo sapiens 0.019046164 1 LEVO MAASVCSGLLGPRVLSWSRELPCAWRALHTSPVCAKNRAARVRVSKGDKPVTYEEAHAPHYIAHRKGWLSLHTGNLDGED HAAERTVEDVFLRKFMWGTFPGCLADQLVLKRRGNQLEICAVVLRQLSPHKYYFLVGYSETLLSYFYKCPVRLHLQTVPS KVVYKYL Q96EL2 28S ribosomal protein S5, mitochondrial Homo sapiens 0.048094594 1 LEVO MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPYASLSRALQTQCCISSPSHLM SQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQR SKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKS IRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAI ITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDE VPDVKLDWEDVKTAQGMKRSVWSNLKRAAT P82675 28S ribosomal protein S6, mitochondrial Homo sapiens 0.014250588 1 LEVO MPRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAPTAAVESMVE HLSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYSTKKRKK P82932 28S ribosomal protein S7, mitochondrial Homo sapiens 0.028186153999999998 1 LEVO MAAPAVKVARGWSGLALGVRRAVLQLPGLTQVRWSRYSPEFKDPLIDKEYYRKPVEELTEEEKYVRELKKTQLIKAAPAG KTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKRKQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVP ILKGGRFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHDLHKMAEANRALAHYR WW Q9Y2R9 28S ribosomal protein S9, mitochondrial Homo sapiens 0.045909859 1 LEVO MAAPCVSYGGAVSYRLLLWGRGSLARKQGLWKTAAPELQTNVRSQILRLRHTAFVIPKKNVPTSKRETYTEDFIKKQIEE FNIGKRHLANMMGEDPETFTQEDIDRAIAYLFPSGLFEKRARPVMKHPEQIFPRQRAIQWGEDGRPFHYLFYTGKQSYYS LMHDVYGMLLNLEKHQSHLQAKSLLPEKTVTRDVIGSRWLIKEELEEMLVEKLSDLDYMQFIRLLEKLLTSQCGAAEEEF VQRFRRSVTLESKKQLIEPVQYDEQGMAFSKSEGKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFPITQDREQLMFPFHFV DRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSFVTEDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR P82933 28S ribosomal protein S10, mitochondrial Homo sapiens 0.0230335 1 LEVO MAARTAFGAVCRRLWQGLGNFSVNTSKGNTAKNGGLLLSTNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLV KGHDKAVLDSYEYFAVLAAKELGISIKVHEPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYI QRNLPEGVAMEVTKTQLEQLPEHIKEPIWETLSEEKEESKS P82664 28S ribosomal protein S11, mitochondrial Homo sapiens 0.020648793000000002 1 LEVO MQAVRNAGSRFLRSWTWPQTAGRVVARTPAGTICTGARQLQDAAAKQKVEQNAAPSHTKFSIYPPIPGEESSLRWAGKKF EEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGFRNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLS AMHGLIMGGLEVISITDNTPIPHNGCRPRKARKL P82912 28S ribosomal protein S12, mitochondrial Homo sapiens 0.015200947 1 LEVO MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKC CRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKLTVVRGKYDCGHVQKK O15235 28S ribosomal protein S14, mitochondrial Homo sapiens 0.015168787999999999 1 LEVO MAAFMLGSLLRTFKQMVPSSASGQVRSHYVDWRMWRDVKRRKMAYEYADERLRINSLRKNTILPKILQDVADEEIAALPR DSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGQLSGIQRATW O60783 28S ribosomal protein S15, mitochondrial Homo sapiens 0.029903293 1 LEVO MLRVAWRTLSLIRTRAVTQVLVPGLPGGGSAKFPFNQWGLQPRSLLLQAARGYVVRKPAQSRLDDDPPPSTLLKDYQNVP GIEKVDDVVKRLLSLEMANKKEMLKIKQEQFMKKIVANPEDTRSLEARIIALSVKIRSYEEHLEKHRKDKAHKRYLLMSI DQRKKMLKNLRNTNYDVFEKICWGLGIEYTFPPLYYRRAHRRFVTKKALCIRVFQETQKLKKRRRALKAAAAAQKQAKRR NPDSPAKAIPKTLKDSQ P82914 28S ribosomal protein S16, mitochondrial Homo sapiens 0.015371898999999998 1 LEVO MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG AHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLLASQKTDAEATDTEATET Q9Y3D3 28S ribosomal protein S17, mitochondrial Homo sapiens 0.014526078 1 LEVO MSVVRSSVHARWIVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLRALPVPRAKHVKHE LAEIVFKVGKVIDPVTGKPCAGTTYLESPLSSETTQLSKNLEELNISSAQ Q9Y2R5 28S ribosomal protein S18b, mitochondrial Homo sapiens 0.029440629 1 LEVO MAASVLNTVLRRLPMLSLFRGSHRVQVPLQTLCTKAPSEEDSLSSVPISPYKDEPWKYLESEEYQERYGSRPVWADYRRN HKGGVPPQRTRKTCIRRNKVVGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDH GLLIYHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPWYPWYNWKQPPERELSRLRRLYQGHLQEESGPPPESMPKMPP RTPAEASSTGQTGPQSAL Q9Y676 28S ribosomal protein S18c, mitochondrial Homo sapiens 0.015876786 1 LEVO MAAVVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKCILCGKHVDYKNVQLL SQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDPAYLKDPKVCNIRYRE Q9Y3D5 28S ribosomal protein S21, mitochondrial Homo sapiens 0.010675494 1 LEVO (AYA)KHLKFIARTVMVQEGNVESAYRTLNRILTMDGLIEDIKHRRYYEKPCRRRQRESYERCRRIYNMEMARKINFLMR KNRADPWQGC P82921 28S ribosomal protein S22, mitochondrial Homo sapiens 0.041337316 1 LEVO MAPLGTTVLLWSLLRSSPGVERVCFRARIQPWHGGLLQPLPCSFEMGLPRRRFSSEAAESGSPETKKPTFMDEEVQSILT KMTGLNLQKTFKPAIQELKPPTYKLMTQAQLEEATRQAVEAAKVRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTD ISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDST EYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQ AAEGINLIKVFAKTEAQKGAYIELTLQTYQEALSRHSAAS P82650 28S ribosomal protein S23, mitochondrial Homo sapiens 0.021805664 1 LEVO MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRAKFYSVYGS GQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVETGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQT ALEENETQKEVPQDQHLEAPADQSKGLLPP Q9Y3D9 28S ribosomal protein S25, mitochondrial Homo sapiens 0.020146427999999997 1 LEVO MPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYL DSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMR GKYKAALKADAQD P82663 28S ribosomal protein S26, mitochondrial Homo sapiens 0.024259819999999998 1 LEVO MLRALSRLGAGTPCRPRAPLVLPARGRKTRHDPLAKSKIERVNMPPAVDPAEFFVLMERYQHYRQTVRALRMEFVSEVQR KVHEARAGVLAERKALKDAAEHRELMAWNQAENRRLHELRIARLRQEEREQEQRQALEQARKAEEVQAWAQRKEREVLQL QEEVKNFITRENLEARVEAALDSRKNYNWAITREGLVVRPQRRDS Q9BYN8 28S ribosomal protein S27, mitochondrial Homo sapiens 0.047669262 1 LEVO MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKTFERKLPVSSLTISRLIDNIS SREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYDAQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDA LSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIE ETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQA KQEYQAQKAAKASA Q92552 28S ribosomal protein S28, mitochondrial Homo sapiens 0.020878846 1 LEVO MAALCRTRAVAAESHFLRVFLFFRPFRGVGTESGSESGSSNAKEPKTRAGGFASALERHSELLQKVEPLQKGSPKNVESF ASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDT TVLEANAVLLGIQESKDSRSKEEHHEK Q9Y2Q9 28S ribosomal protein S29, mitochondrial Homo sapiens 0.045634406 1 LEVO MMLKGITRLISRIHKLDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDLETVFP HGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHL WVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTNERFLNQIKVQEKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAV GIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPEELALVHNLRKMMKNDWHGGAIVSALSQTGSLFKPR KAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNWLQHEKAPTEEGKKELLFLSNANPSLLERHCAYL P51398 28S ribosomal protein S31, mitochondrial Homo sapiens 0.045391472999999995 1 LEVO MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYFGTNSVICSKKDKQSVRTEET SKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAAS AVADSLPFDKQTTKSELLSQLQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEELIQWTKEGKLWEFPINNEAG FDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN Q92665 28S ribosomal protein S33, mitochondrial Homo sapiens 0.012657775999999999 1 LEVO MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAELMQTLRFLGLYRDEHQDFMD EQKRLKKLRGKEKPKKGEGKRAAKRK Q9Y291 28S ribosomal protein S34, mitochondrial Homo sapiens 0.025695548999999998 1 LEVO MARKKVRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRLPLFGLGRLV TRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTFKGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDS LASVPYPPLLRAMIIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGTPV P82930 28S ribosomal protein S35, mitochondrial Homo sapiens 0.036898328 1 LEVO MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSA VPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSG PSVRNPRARVVVLRVKLSSLNLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE KSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKNEEENENSISQYKESVKRLL NVT P82673 Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 Homo sapiens 0.013409661 1 LEVO (AYA)TPSLRGRLARFGNPRKPVLKPNKPLILANRVGERRREKGEATCITEMSVMMACWKQNEFRDDACRKEIQGFLDCA ARAQEARKMRSIQETLGESGSLLPNKLNKLLQRFPNKPYLS Q96BP2 Aurora kinase A-interacting protein Homo sapiens 0.022395326 1 LEVO MLLGRLTSQLLRAVPWAGGRPPWPVSGVLGSRVCGPLYSTSPAGPGRAASLPRKGAQLELEEMLVPRKMSVSPLESWLTA RCFLPRLDTGTAGTVAPPQSYQCPPSQIGEGAEQGDEGVADAPQIQCKNVLKIRRRKMNHHKYRKLVKKTRFLRRKVQEG RLRRKQIKFEKDLRRIWLKAGLKEAPEGWQTPKIYLRGK Q9NWT8 Pentatricopeptide repeat domain-containing protein 3, mitochondrial Homo sapiens 0.078648547 1 LEVO MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCRFYSGSATLSKVEGTDVTGIEEVVIPKKKTWDKVAVLQALASTVNR DTTAVPYVFQDDPYLMPASSLESRSFLLAKKSGENVAKFIINSYPKYFQKDIAEPHIPCLMPEYFEPQIKDISEAALKER IELRKVKASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPSTDYHFQQTGQSEALEEENDETSRRKAGHQFGVTWRA KNNAERIFSLMPEKNEHSYCTMIRGMVKHRAYEQALNLYTELLNNRLHADVYTFNALIEATVCAINEKFEEKWSKILELL RHMVAQKVKPNLQTFNTILKCLRRFHVFARSPALQVLREMKAIGIEPSLATYHHIIRLFDQPGDPLKRSSFIIYDIMNEL MGKRFSPKDPDDDKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYSKFFDLICLMEQIDVTLKWYED LIPSAYFPHSQTMIHLLQALDVANRLEVIPKIWKDSKEYGHTFRSDLREEILMLMARDKHPPELQVAFADCAADIKSAYE SQPIRQTAQDWPATSLNCIAILFLRAGRTQEAWKMLGLFRKHNKIPRSELLNELMDSAKVSNSPSQAIEVVELASAFSLP ICEGLTQRVMSDFAINQEQKEALSNLTALTSDSDTDSSSDSDSDTSEGK Q96EY7 Translation initiation factor IF-3, mitochondrial Homo sapiens 0.032545461 1 Homo sapiens LEVO MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAEDTQNEGKKIKKNKTAFSNVGR KISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKE LILSSNIGQHDLDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL RALSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQGLEVLFQ Q9H2K0 NICOTINAMIDE-ADENINE-DINUCLEOTIDE 0.0006634249999999999 1 NAD SPERMINE 0.00020234 1 SPM STREPTOMYCIN 0.000581574 1 SRY MAGNESIUM ION 2.4305e-05 60 MG POTASSIUM ION 3.9098e-05 17 K ZINC ION 6.5409e-05 1 ZN FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES ADENOSINE-5'-TRIPHOSPHATE 0.000507181 1 ATP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 0.000522196 1 GNP water 1.8015e-05 59 HOH singleParticle particle 0.7 7.5 0.1 KCl Potassium chloride 25.0 HEPES-KOH 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid-potassium hydroxide buffer 5.0 Mg(CH3COO)2 Magnesium acetate 0.25 C10H17N6O13P3 5'-Guanylyl imidodiphosphate 0.05 C24H46O11 n-Dodecyl-beta-D-maltopyranoside CARBON HOLEY GLOW DISCHARGE 30

The grid was coated with 3 nm carbon film prior to use

ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.0 0.25 3.2 5.0 130000.0 165000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum LS 20 GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 2-20 1 13831 4.0 1.5 1 1103314 EMD-2880 C1 2.97 FSC 0.143 CUT-OFF RELION 3.0.2 379761 PROJECTION MATCHING RELION 2.1.0 ANGULAR RECONSTITUTION RELION 2.1.0 RELION 3.0.2 emd_10021.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 398.4 398.4 398.4 90.0 90.0 90.0 X Y Z 0.0 0.56178486 0.0008254385 0.008667793 0.83 0.83 0.83 0.04 AUTHOR ::::EMDATABANK.org::::EMD-10021:::: Composite map, local resolution filtered 3J9M PDB experimental model AB INITIO MODEL Cross-correlation coefficient REAL 36.0 emd_10021_msk_1.map emd_10021_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 398.4 398.4 398.4 90.0 90.0 90.0 X Y Z -0.018741675 0.0607559 0.00006813234 0.0019472623 0.83 0.83 0.83 AUTHOR ::::EMDATABANK.org::::EMD-10021:::: Overall map without sharpening emd_10021_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 398.4 398.4 398.4 90.0 90.0 90.0 X Y Z -0.017643632 0.056428734 0.000068439425 0.0021305499 0.83 0.83 0.83 AUTHOR ::::EMDATABANK.org::::EMD-10021:::: emd_10021_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 398.4 398.4 398.4 90.0 90.0 90.0 X Y Z -0.017747886 0.055941675 0.00006782526 0.0021284444 0.83 0.83 0.83 AUTHOR ::::EMDATABANK.org::::EMD-10021::::