PSI-LHCI Supercomplex from Physcometrella patens

2025-09-17 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY database_2 em_admin _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update STRUCTURE_SUMMARY chem_comp chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature pdbx_validate_chiral _chem_comp.formula _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update _pdbx_entry_details.has_protein_modification STRUCTURE_SUMMARY em_admin pdbx_modification_feature pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_conn struct_conn_type _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update PDBj PDBj 2019-10-09 2021-02-10 2021-02-10 2025-09-17 PSI-LHCI Supercomplex from Physcometrella patens Zhao L Yan QJ Cryo-EM, PSI-LHCI, Physcomitrella patens, STRUCTURAL PROTEIN Yan Q Zhao L Wang W Pi X Han G Wang J Cheng L He YK Kuang T Qin X Sui SF Shen JR Antenna arrangement and energy-transfer pathways of PSI-LHCI from the moss Physcomitrella patens. Cell Discov UK 7 10 10 2021 33589616 doi:10.1038/s41421-021-00242-9 2056-5968 6l35 FULLOVERLAP EMDB EMD-0821 associated EM volume

Structure of PSI-LHCI from the moss Physcomitrella patens

PSI-LHCI PSI-LHCI 0 Physcomitrella patens Photosystem I P700 chlorophyll a apoprotein A1 Physcomitrium patens 0.082313422 1 LEVO EVKIMVEKDPVKTSFEKWAKPGHFSRTLAKGPNTTTWIWNLHADAHDFDSHTNDLEEISRKVFSAHFGQLAVIFIWLSGM YFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQKILNGDVGGGFQGIQITSGFFQLWRASGITSELQLYTTAIGGLIFAA LMLFAGWFHYHKAAPKLAWFQNVESMLNHHLAGLLGLGSLAWAGHQVHVSLPINRLLDAGVDPKEIPLPHEFILNRDLLA QLYPSFSKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDTAHHHLAIAVLFLVAGHMYRTNFGIGHSMKEILEAHKG PFTGEGHKGLYEILTTSWHAQLAINLAMLGSLTIIVAHHMYAMPPYPYLATDYATQLSLFTHHMWIGGFLVVGAAAHAAI FMVRDYDPTTQYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQNTH ALAPSLTAPNATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLG FRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSITINGWLRDF LWAQASQVIQSYGSSLSAYGLLFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIVQGRAVGVA HYLLGGIATTWAFFLARIISVG Q8MFA3 1.97.1.12 Photosystem I P700 chlorophyll a apoprotein A2 Physcomitrium patens 0.082316547 1 LEVO ASRFPKFSRGLSQDPTTRRIWFGIATAHDFESHDDMTEERLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWGQDP LHVRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIAYSGVYQWWYTIGLRTNQDLYGGSIFLLFVSALFLIAGWLHLQPKW KPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNLLTALPHPQGLGPFFAGQWNVYAQNPDSNS HLFGTSEGAGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVIFIIAGHMYRTNFGIGHSMKEILEAHTPPGGRLGRGHKG LYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPPYAFLAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPE QNKDNVLARMLEHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPVFAQWIQSAHGKALYGFDVLLSSA DSPAFNAGQTLWLPGWLDAINNNSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKEFGYSFPCDG PGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVAQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMN SLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFSVGYIFTY AAFLIASTSGKFG Q8MFA2 1.97.1.12 Photosystem I iron-sulfur center Physcomitrium patens 0.008649957 1 LEVO AHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY Q6YXQ2 1.97.1.12 Predicted protein PsaD Physcomitrium patens 0.015654927 1 LEVO TPPTLNADTPAPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRSGPNLLKLARKEQCLALGARLRTKFK IQYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRSPVGVNNRSIGKNANPAELKFAHKQAYDL A9SRC8 PsaE Physcomitrium patens 0.006895725 1 LEVO GPKRGSIVKVLRRESYWFNDTGKVVAVDQAPGVRYPVVVRFDKVNYAGVSTNNYSPDELEAA A0A2K1IKE2 PSI-F Physcomitrium patens 0.017465363 1 LEVO DVAGLTPCKESKGFAKREKQEIKKLESRLKLYAPDSAPALALNATIEKTKRRFAFYGNEGLLCGTDGLPHLIVDGDQAHL GEFVYPGLVFLYIAGWIGWVGRAYLIDVRTSKKPTEKEIIIDVPLALRIMSKGLTWPVAAIGELRSGKLVEKSANITVS A0A2K1J0L9 Predicted protein PsaG Physcomitrium patens 0.010564831 1 LEVO EANTALTITLSTGALLFLGRFVFLPFQRDNVSRQGLPVQNGVTHFDAGDSRAQEVTSFLKTNDPAGFTIVDVLAWGALGH AVGFFILATINNGYNPQF A9SJ10 PsaH photosystem I reaction center subunit Physcomitrium patens 0.009861087999999999 1 LEVO SVYFDLGEIDNTTGNWDLYGNDDPNRYNGFQNKFFETFAGAFTKRGLLLKFLVLGGATTIGYLGSTSSPDLLAIKNGPKQ VPVMGPRGRK A9SL09 Photosystem I reaction center subunit VIII Physcomitrium patens 0.003791472 1 LEVO MTASYLPSIFVPLIGLVFPAITMASLFIYIEQDE Q6YXR3 Photosystem I reaction center subunit IX Physcomitrium patens 0.00459746 1 LEVO MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALVLPL Q6YXM2 PsaK Physcomitrium patens 0.007916145999999999 1 LEVO YIGSSTNLIMVASTTLMLFAGRFGLAPSANRKSTAGLKLVDRDSGLQTGDPAGFTATDTLACGALGHVIGVGIVLGLKA A9SFV4 PSI subunit V Physcomitrium patens 0.016892416 1 LEVO KYQVIEPLNGDPFIGGFETPVTSSPLIAWYLSNLPAYRTAVAPLLRGVEIGLAHGYLLVGPFVLTGPLRNSAVRGEAGSL AAAGLVTILTMCLTIYGIASFKEGEPSKAPSLTLTGRQKDADKLQTAEGWASFTGGWFFGGLSGVAWAYILLYVLNLPY A9S7M7 Photosystem I reaction center subunit XII Physcomitrium patens 0.003051623 1 LEVO SISDSQIIVALVSAFITGILALRLGKSLY Q6YXK4 Chlorophyll a-b binding protein, chloroplastic Physcomitrium patens 0.022922107 1 LEVO ALPNNDRPLWFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSW NVAGDQQYFADPTTLFVIELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKE LRTKEIKNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFALS A0A2K1K0C7 Chlorophyll a-b binding protein, chloroplastic Physcomitrium patens 0.020761584 1 LEVO EWLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQKWAATPGGQA TYLGNPVPWGNLPVILAIEFLAIAFAESQRNGEPDPEKRKYPGGAFDPLGFSKGANLEELKLKEIKNGRLALVAFLGFAV QAIAYPGTGPLENLKTHLADPWHNTIAHVIIP A9T399 Chlorophyll a-b binding protein, chloroplastic Physcomitrium patens 0.023250502 1 LEVO FASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIGLIPQETAIPWFQ SGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEK ELQELKVKEVKNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTN A9TEM8 Chlorophyll a-b binding protein, chloroplastic Physcomitrium patens 0.022445592 1 LEVO GAERPLWLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTDIPVWFEA GATKFDFADTTTLFVVQLILMGFVETKRWMDIVKPGSQAAEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLR WKEIKNGRLAMVAMVGFMVQAYVTKTGPIENLLTHLSDPVHNTII A0A2K1KN29 CHLOROPHYLL A 0.000893489 144 CLA PHYLLOQUINONE 0.000450696 2 PQN 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 6 LHG BETA-CAROTENE 0.000536873 26 BCR IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 1 DGD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 3 LMG CHLOROPHYLL B 0.000907472 12 CHL (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.000568871 4 LUT (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL 0.00060087 4 XAT singleParticle particle 7.4 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 GATAN K2 SUMMIT (4k x 4k) 50.0 1 CTFFIND 4.0 NONE C1 3.23 FSC 0.143 CUT-OFF RELION 3.0 70288 MAXIMUM LIKELIHOOD RELION 3.0 MAXIMUM LIKELIHOOD RELION 3.0 emd_0821.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 407.424 407.424 407.424 90.0 90.0 90.0 X Y Z -0.05337422 0.16238572 0.0000822962 0.0043891533 1.061 1.061 1.061 0.03 AUTHOR ::::EMDATABANK.org::::EMD-0821::::