2024-03-20 REL RCSB RCSB RCSB 2019-02-01 2019-02-27 2019-05-29 2024-03-20 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI123498 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI127521 United States SARS-Coronavirus NSP12 bound to NSP8 co-factor Kirchdoerfer RN Ward AB coronavirus, polymerase, non-structural protein, VIRAL PROTEIN Kirchdoerfer RN Ward AB Structure of the SARS-CoV nsp12 polymerase bound to nsp7 and nsp8 co-factors. Nat Commun UK 10 2342 2342 2019 31138817 doi:10.1038/s41467-019-10280-3 2041-1723 EMD-0520 other EM volume 6nus FULLOVERLAP SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors SARS-Coronavirus NSP12 bound to NSP7 and NSP8 co-factors 0 1 2 SARS coronavirus 0.13 NSP12 Human SARS coronavirus 0.109277031 1 Spodoptera frugiperda LEVO MGSADASTFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNEKVAGFAKFLKTNCCRFQEKDEEGNLLDSYFVVKRHTMS NYQHEETIYNLVKDCPAVAVHDFFKFRVDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFN KKDWYDFVENPDILRVYANLGERVRQSLLKTVQFCDAMRDAGIVGVLTLDNQDLNGNWYDFGDFVQVAPGCGVPIVDSYY SLLMPILTLTRALAAESHMDADLAKPLIKWDLLKYDFTEERLCLFDRYFKYWDQTYHPNCINCLDDRCILHCANFNVLFS TVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSV AALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDK YFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVA GVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVETPHLMGWDYPKCDRAMPNMLRIMASLVL ARKHNTCCNLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADK YVRNLQHRLYECLYRNRDVDHEFVDEFYAYLRKHFSMMILSDDAVVCYNSNYAAQGLVASIKNFKAVLYYQNNVFMSEAK CWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYA DVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLLVPRGSGHHHHHHAWSHPQFEK P0C6X7 NSP8 Human SARS coronavirus 0.02188799 1 Escherichia coli BL21 LEVO AIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKR AKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVV DADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQ P0C6U8 ZINC ION 6.5409e-05 2 ZN singleParticle particle 3.1 7.4 25.0 C8H18N2O4S HEPES 300.0 NaCl sodium chloride 2.0 TCEP 0.01 MgCl2 magnesium chloride 0.06 n-dodecyl-beta-D-maltopyranoside
n-dodecyl-beta-D-maltopyranoside was added just prior to spotting samples onto holey EM grids.
 Quantifoil, UltrAuFoil, R1.2/1.3 GOLD 300 PLASMA CLEANING OTHER ETHANE 100 277 FEI VITROBOT MARK IV FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 70.0 2.7 0.4 1.0 43478.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 3838 3710 1-47 1 1677 11.75 50.5 1 2003890
Initial model generated using stochastic gradient descent in RELION-2.1
 C1 3.5 FSC 0.143 CUT-OFF RELION 3.0 71262 ANGULAR RECONSTITUTION RELION 3.0 ANGULAR RECONSTITUTION RELION 3.0 4 RELION 3.0 emd_0521.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 294.4 294.4 294.4 90.0 90.0 90.0 X Y Z -0.13225228 0.21131472 0.0000064397564 0.004693786 1.15 1.15 1.15 0.035 AUTHOR SARS-Coronavirus NSP12 bound to NSP8 co-factor, merged full map REAL emd_0521_msk_1.map emd_0521_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 294.4 294.4 294.4 90.0 90.0 90.0 X Y Z -0.049734425 0.07972977 0.0000065313834 0.002611368 1.15 1.15 1.15 AUTHOR SARS-Coronavirus NSP12 bound to NSP8 co-factor, first half map emd_0521_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 294.4 294.4 294.4 90.0 90.0 90.0 X Y Z -0.05218456 0.08227544 0.000005659449 0.0025709807 1.15 1.15 1.15 AUTHOR SARS-Coronavirus NSP12 bound to NSP8 co-factor, second half map