2024-11-13 REL PDBe PDBe PDBe 2018-08-31 2018-09-26 2018-09-26 2024-11-13 Swiss National Science Foundation Switzerland Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3 Ramrath DJF Niemann M mitoribosome, translation, Trypanosoma, small ribosomal subunit, 9S rRNA, ribosomal protein, mitochondrial initiation factor IF-3, RIBOSOME Ramrath DJF Niemann M Leibundgut M Bieri P Prange C Horn EK Leitner A Boehringer D Schneider A Ban N Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science US 362 2018 30213880 doi:10.1126/science.aau7735 1095-9203 0038 SCIEAS 6hiy FULLOVERLAP body of the T. brucei mitoribosome small subunit in complex with mt-IF-3 body of the T. brucei mitoribosome small subunit in complex with mt-IF-3 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 Trypanosoma brucei brucei Lister 427 1.35 mS48 Trypanosoma brucei brucei 0.20181118799999997
residues 1470-1487 built as polyalanines
1 LEVO MMRRVASTGSNGGHCYVGSSLWADSVYMEVSSITLQKRFSFKYATKLQHDEMRQPYYIHEKRYGIFSNERNIAKARRGLP FITPLYTKHMNLWDTDTDASNNRFFRGYYYGQRELHQLLGRPHSLEATNADGSNDLSTYEANTSQLYKGIPRPAITNLHY EPAWRYTLYQAGAHGAQLSNPRSPFTAKVLGDELMQVRDIKSVEHCKAWFDRLQYLINLHYEAVGDIGEFKSRHTRHVHE FFVAFHDALSSLDFRDTYLFDQFKAVRPPELSDLFGIFLEMEANYVHEDYCPRCSLPYSTTRYCGEGDVDTPFRKHRGRW APHQKWGREWYDVVARRAEALWYRATEDPYFGTPQHTQRQAEALLKVYVQAKQRGKAIDFMNKLRGSVEYLTGDITITTV MQESYDALLDTTPHPHLLTNGFTLESDAAKYTGEVNKAPLSPLQFRIDMEMNKYRRQQKEEGVVRVPPALWRLDTSAIVP YKVDSKTRRIVNWREVKEGIEKSFLSVGLPKEAYTGNEWREMLYLHDVIANREAKAAVLEQQQKLDREKLKARERASLKG EKSSNSASNGIGIIFPDKDGYQVFFVDEASLRPFGIGASGTLFKAVARVYPSPAAVPYDDPVHGKQFLIDTTDETCHLFG GFEHGDRLLLRAKSSGGDVDGGNNSNCRNTGSFTDEEEEVIVMGVSTEGSDAERMLCAMHVDTGKQRERGIVFLGTDCID IRERWESVRYAASAYVKGRVTLLESQRTAREEFMGQVVGIRDGVLFVQWRLLKGGGSVLDRSVAVPIGDSTQVRELFVET KVLGVEPLQSPPSWRTPFRNDFAEERLKELQRAPFKREKYVSLIQGKYTPKVKKFGYTQHTTVDDFETKEYKDRLLSKQF FQNPQAFEVVPDRHERSVQFGGKWEYQRTHGLPTVDRNELENGWSEVEPISDGEMKVIEQALRDISGPRPGNFVKPPSKT KSLQLSESWWEPLGYGWEQHNEEQKALCDVTEQRLIDGSNLPFGGKLPPFGTSYGMGERMRAIIEDYSKGFGLGPHGHSP THDTIHYNTLNAEGERVRDLGYTDALGRLFSEKLGDRDVHQWAVESCADGEADVRQLLLSLHEWRERGRPPSLLLANVLS KYLEEEIAAFNKGIPENAPKLQLETSDGTLAHSGSGGSRSGTMWADVDPTTFALHQASQSTRSTRCDEPFILHLVKRAKL GECVTNFTDTAYIAHLESSVINEFHLALTKLVGKGISPTLLAQKTGQLHRGSVRVGGNVVPFVKSRELSRLLERMGLTSE SIAVITRGLANCPEQESVGDDFAVPVSLILSWDGPGSSGGSGSGDRRLNTTAARNEQQRKGSAALSSAIRQLSQHQKQRG SASGRGWQNEDKMVVHVLEELSLRNDGLVMDIQYAIRENKKNRRLRWEFVTTLLPVFGGNEAKVEQLYSDYCDGKYVPNI TVAVEAFIAFLHNATQHPETYSASDYFDIDDGKSSTASGTGDQPSAGQYTTLKLLDPLEGPFVFDNVKVEYIQTVERFRR HGIRAGPVMAPATGFIAANCKSLNYFTRRQEEVVYVTNDSDQGLRRSLENSAYHKTIAANPALQYLLKARRGAALVETFN RFFYRTMPMLNFYQNVLKHYSETIQPLRQAAKSSTRGLARALESERSAAMEEFRRNSERYWRNIIEGRSVEQVVLANGES NRRTVGGGAGEQLQKPQGNRDAVRTNFTGEATDGSRKGQRQHQQPPLSQQQQHSRGEGERSAVHTSPRQGGSRGMADLLS KLNTPKTGSGVKGSTAKNTGNNRRGPKS Q57UJ2 mS51 Trypanosoma brucei brucei 0.09508099199999999 1 LEVO MLRCTVVGHHRSGKARAFVFRDPSLRMMRAGSGYQQLRRMGMPMQVGMGWRKVDSFHANTQYQHAWPLLSHDDLGNSDQS NNTKNIMYSMYMPKRNKGTAPWFRGADTYSVKYCEQGRYEYQRYLMINRFPSEYKKHFLSFLSNIRMSSGSATIPQEALH WLLRMIVDNFNPQHVHYIAAMKTLQSAGELDMARDVWKIMERQQTWPCTATICAYLDVCVEAGEKTWAMEAWNRYCTELK FLEPGEVDPKPISRVPFSLTREELLYLPKWKKHFDHDPNLDVMDLNRFNRTREVYLRMAQVMLAGGERNAFQHFFTKLEE AMLNKPTPVPEPPNPHLVRRPRWAPYEHCKSVHHSPWRLQNNGRALALGPPVTIEDEMQSRFFSNDQFLVHSVKEVLRIV LQEHKRAHPTECTRCKTEAFFYKTKDADETLKFCDDLIERLFASLGVRLSNLNTSSLLSTILEVFRVVGKESGAALLQRA NEFLERKASLGDAEGSRENLTASNYLQVLSGFADESAFVYNTKKDGTCQYKTGFDPRTTMRHLADVVQEIAGNPHVTWAA DMHLQVVETMVGCGTMKANDYFVRNVLRQFSWDSRFLEALYVEYRRQDDVDMWAELTKRALVWTARYNAPASERLRRLIE DDYDTIRVQTRTFRELAVFQFRDVEERRHSRDVVNELPNPWYDYVAHALPFPDRDAGYPDEYGDLGQWRAPGGPGSPVRG PGYYAPPMEGEHQRGYTAEWRDLRNPMRPPEFPTPWERKYRQYARGQHPSYDMVYAGPMPEIFPMRRDFRKPTRWDFHDI EKQGKYRTSGPY Q385L8 mS56 Trypanosoma brucei brucei 0.047306836 1 LEVO MRKFCHFMANCWNSARSHATYGAVPLTHSQVTSVYATDGGKVDELGLLELVEERIFSWKLNKWEMRIPPNLPNDQKELIR QEQENLKQILSEWRKCFGALNADILQISSLTGVPKDVVREKNRTWLQEEVAKLRWMGEVNKAALLRDAFMRLEAFGSRDF MFMERLCCIYGLARQGTFDEAFTNYITEDPVTNDIFVDERNPFKELVAHIVRNYSQIDIIYDFLGFNYSEGYRSSLRRYM EYLQCKTAENVRASGRLVTGDKGEHNILFDYCVSRESLVSGDSCQGIIDFLYINGNDVTLIIIASDNPWLRNRQLPHRRQ MEGIARRVCFVLGIPPSEVRIRNLLLPPTYLDKGSIVRLNDIVFRLSNEQSNLLIPWLTNYNKELDPKDVDYTALAKTTN EEEWLTL Q587C2 mS59 Trypanosoma brucei brucei 0.035395676 1 LEVO MRCSCAFLDKSVFAAKRRVIVPIHPTPNFPAHFIKSAFTTDPLKEKQKARFSSGGEAMREVQDIPKNLEGERSRRDLASR GDTEFQALVEFIEGASYDQLISGRRFKKVYDVLSENDDMFIWLCHTAMSVLNPGDMRSRLIYNHLRILAESVASGEMTQR TAFRFFESAVRSPAYREIAKRQLEGGAATRLAGISAAADVMRRMGLTRRPMSSYFELYQRIVERSEAMTPWGFPPLFQFE ERLSLEPRLKFFSRASQQSLERRRRGHVMTPHTTLHGRRIFWIPPTWNRAGRFLGPHVTLYPGMTPD Q38BS2 mS60 Trypanosoma brucei brucei 0.034546641 1 LEVO MEVYRRITERVRGALWAHHGRLMSERQFHRILAFVYNNKYEYQIRFDRMEVVGREWGGRVEVVTTPAGFLKRVRVNPCVE DLTLYQQQQLILSAYANACADGRKLMEQAEMNIYKQFLKDLKPIVMGIRDNPEFYTVSENSIETIGGVLQTGDSNNLCHT HRTIPAAKARQPADEVRARQEWEQKWINSPRGQSWALTLRGKTYFALHGPQYRPRGAPGAKKETLPLDIPAPYTAMDEKR LLKKNWMAYLDNKHVAEVMWTRVKIADREKRQRLLQETGRAWHRPINEEAINRW Q57XL2 mS61 Trypanosoma brucei brucei 0.03348233999999999 1 LEVO MLCRTFLRQFRMSGGDMFVEYKVLSRDHRRSIRVEDAIVDPTFKRTVLPLGWLELLRSPSLRLPTGYFVEETVHVSLPNA TSNGGKKEARPQKGGFASGSPSVGRNEANAIIAGPVVLYITGQSVPVVLNPYFVPEGTWDMRTRDGELDLRLGMDAIEQC TLFSELRPGGLLYGKLPENPNVRRNESLRATLGRYGMKCDLAESPLVPRPWTRMRYMFIDELQRGPKLTEFVGHNPRNGT PWRFSQNTKYFRIGIWRDTIRRNDMNEGLHAHSSWQKSPQQSVPEVRFLAPYP Q38D60 mS62 Trypanosoma brucei brucei 0.032068099999999995 1 LEVO MRRFCTARVSSYVKRAPLLLPRGGRRWRSGAGTTADGGGEKEYIADSFESTAGSNAYAAMELAAEARREIHELWLSAETA LEREKRVQQVAALIEKYKLDPSTPREADVSRGLGDAFDRLLLLCLPLGKTDAKGTDNLERLMHLAGRNGRELSVRTIQHL FARTDSFAEALAVFYTMRRCHVAMNMEAYYSMLYSLQRLEEEGWGQHFRNEYEENGAPSEQAMDFIVKGISNALLPENKP WLGRVMFQDRNVPDRRYDTRDFDELDTAWTQRYKSGTPAGAH Q383D1 mS63 Trypanosoma brucei brucei 0.031922177999999996 1 LEVO MLHGTPVRRASLRYRRPYWMMFLKGVDNWKIYTVIQQPDHQRTEMLYQAWLGGLDRPYTRPKCMANQPLWLSKKRHMLRK ERLDGPETPLEKYVLEWHKKFHSFQGTERPTPDDLHTALDLVERPLDLSYALQLLGQCRNLNNIRFAKETFLVFLEACLR VGRRDCAEYALEHAEPLGFWFIDEDHRRYLQGEQTWYKLSPLDNLYYPVEENAKLNEGRKPITRLSPATESPGSGTAISD GEPSTDVEGETTVDDEIAQLEAELAALEREGGGK Q38F25 mS64 Trypanosoma brucei brucei 0.030742206999999997 1 LEVO MLRRVPRVLQKGERGLYFPINHRIVDHRIAPGVTVEETDVQSRYRRELRTNFATGETRQTIAPPWSARERPTHFFSLRLP SRNSVTLRVKEMHNHLLFSHQQCAPMLVSPTKLHITLGVMTIPENSREELVKNIQQSMSETFACVQPLQLRFRGLGTFDF GRVLFIRVVPEADFGRLERAVCDIRRRVGGVLGVDLKGNPHDSYVPHVTVAKIRPNQRQQLGDTIPQSLWADYQHHDFGD VTLSTVDLCRMKGSPDGYYHTEGAVHLS Q382E8 mS65 Trypanosoma brucei brucei 0.030617381 1 LEVO MFSESLCILSRRFRYNTKFPALVSYNKLPWEVVNHETPQFHMHVAPHYEQLLTLAASSPVPHIIGSKHIDVPREHRLRLL PGMLYLLDGDTLPGEFTINRVLDPTALQYYGRLSSQIVTVEAVRMLVPDDLRLLCNCITFKGPLHLPVAPYASLASLRGA SQGGTTGSETGSNCFTLYHFVRPNRPPKELQLEKYYIHAPCVAPLSEFASNSDERGNWRPRLQAPKRTRRATPLPAYRPP QSYLMGLAERLAVVPGGCFGRRSLMWGHWF Q57UA2 mS66 Trypanosoma brucei brucei 0.029960182 1 LEVO MFNRNFILRAAEFKQKSRWSSVWPNMRYGSMFLSYSVGRKLPMKGVNWVTRDSNRLLNFSNRYSAVISDIDVKRTEEELN VALSDIRWNDHRRIYWKCSFCGSSYRKNVSVRTKYHAGCNFCKKKYPSEVRGEQHGSPPVSQAAPELTEQLVDNGKRDNL ATLAVTSKFYAEWTCRGCGGSYRSTIRSRTGQVEAGQCTLHPDIVAWSAYCPSCSWRPNMVPIAEEVSRSGQFLGLERSM EELGGQRGKQLPIPRRKRLAC Q388L7 mS68 Trypanosoma brucei brucei 0.026472807 1 LEVO MRRGALSLLKAGLLGHYQQEAFEARKRFEESTTYPGPIRAATPGDTRFYSGSLESILHDTDRHYWRAVTDDPRVQHLIPL RIRFKIFTWVTSGWEQRMQVVQIMAPKDSTIAQVKDLVIVENQSPYLCVSSFHLAIDGKELDPQKTLGEYGITEQSQIDA IEQNDHLLHRDDERPRDWTVDEITAEDVKRSPYKEMEMQPLQNLAPRYEARPKGYFGRTYYSGMKQSS Q582T9 mS73 Trypanosoma brucei brucei 0.011360885 1 LEVO MLRRSILFRMKYADLELTTRGEFPHGMKEPAFVKKLDQNIPWYFSTYRSMYHWPITGDNWSDLNEAEKHHDLHMFYTLAW WKLGEGIFGVDEDS Q587C4 mS74 Trypanosoma brucei brucei 0.008203407999999999 1 LEVO MFSLTQTWLIAHWYCGHKFRHRFMRDKRFHPSLQASHDARNRFSKRRHFKTNRWNYQQAYRDMP mS55m Trypanosoma brucei brucei 0.050147355 1 LEVO MFRLTAASQKNLNSWYTKGTMRGGVPRIYYAWMRPGSFTRRRFEKMRNPFVDLETGTSLYFRDTRDSAEAIAHAADSKGI KGMDNAIDLYNEYRIVPDLYPEGFQWKHKLNTEYNQWRSNTWLTPDLIPKEHRGRFLCNFQLNIVAYDMRVVKFSPKDHR QWIYCVLYVGSGKGIAGWGRAVAPSTQEAKKEAIREAFSNIIAVDLEQEGPMYPVRVNADGVRVLLYPARRIVANFRVAD ILCAFGFQHAGCRINLKATNNPKSPTHTVEGVFEAVKALRSVSEIAASRGKVPHSLIYNIYPYLEEIRRRKGMMAMHPPG KDGLLMPDRVVDNRLPDHLKRGYYDDVYWKDFFAGSDEHLNEPRMGLRGDEMRRRLEEAQTSPAPTTAKDTRRRTLEDVL KRLGKTTRDLGSIPIVNPRVDVGLPTHIKRNYQLH Q38AX6 bS6m Trypanosoma brucei brucei 0.018861543
residues 105-114 built as polyalanines
1 LEVO MVFYSFVLVMKPRQRRFTSQALREIGVAVYSNGGLIRSITNEGIMRPYSRFRDADNTPLTYARYIILQLDMGEEEMGKVD KIIREHQDVLMALKLNNLERPVGIRSGNKELQAAYFPLDTFTRLEEEINWSPQTSADIYTQLEMNWKEFSRTRWSSFLRN Q38BW5 uS8m Trypanosoma brucei brucei 0.032766459 1 LEVO MLRQSLLSLAKVYGAVPPLGAAQGHRLLHGKREREGSLFAVANDVKRDERLLRQQLNALLEEERMPMQARLQRNEAVSSH EAVPQTPLVDLPGVERRRDLPADPITRLFFQHKGDHALYYGTYDKPSVQDDDRVQIEKRVPRRREENLYTPIYDFCHRIR EATEQRKRFVVVPSTIETRGCARVMHDHGLVAGFRDFHNDRAFAVELKYFQGDSTINVIEPCSYDGRTEFEWSPKMMRRL LNTHGIHNRLVVYICRTADNRIIDHIHAVKENIGGRGLMMVH Q388R7 uS9m Trypanosoma brucei brucei 0.050201016 1 LEVO MQKLLSPRTARHARLFRLAGKLADSGSPGVPKSDGERLVWVNSHVRRDKDISLSQEEERIRELMMPLEVGENSFAANGQA THGNLFYFREYPMYPGEYVPAEHNTLSSLRDELRLDLTAQSLKEAWMRVSGGVYFQSVDEYYASVDGLDAEQIGEVLAAL FPELNCYEAQALVQRTLECISRPVSAASRQLSRTITAEAVGLDNAPGHYTNFLEWMGRLTETRAFKTEHALFEFSRRKFN RDDVRVMFENYRLMSKATLLADSADSYSHFYTVLKDFARKVAGEDSRHQIGVRIDEAEVDPETGIAVGRGCADGEKYHFT ALLRENRDHNGIITVMGKPLSLVLDNKAWLMEMVLMPFDEANLDYRDFDAHIVSEGHAMPSIANEIAAFALRMAVANALV KLIPLTRIPLKKSGLLSVDRRRERGQFPGYLDGKKVKRRFAKR Q57W62 uS11m Trypanosoma brucei brucei 0.03792591 1 LEVO MMRKSVTFLRRGKPRPRAGMFPDKYRRVPMLLKPQQGGQQYFNHFLIRSTNDRLTQQDVDNASGQAHSFISPQLPQMDWR NMSARSSEESIREEMRQLAENDVMQHQRVFNERMWYEKEEEHRMKARSCPEETSEHA(UNK)SNDGAVPPPRVLGGDYFK TRFGYSLVKNSEMTQGPVDYSQLDMWGEMPRYTSDMVFLYLVSRRRNTYAVAYTYEGKRILNTYTAGNRGLKGGDRGFRS EGSTDNGHQVTSMYLNDLLPKLREMRASEGRPMGRGEKVELVVRVMGFYNGRQGAVRAVQDRANEFHVRYFEDITPFPLN GPKMPRGVFK Q389T7 uS12m Trypanosoma brucei brucei 0.010421635
mitochondrial gene subject to RNA editing alternative start codon
1 LEVO LFFLRMWFLYGCCLRFVLFVLCYYMSPRLPSSGNRRVLYAVFYLYNFVWMLRCFFCCFIGLVMSLFIIEGGGFVDLPGVK YYTRIVS uS15m Trypanosoma brucei brucei 0.050401191 1 LEVO MFVRSFCFLRKYGSKSKTPDLKTSFTKTTNFRKAEKISITTTDGEIVKGRGKIRRRTHSALKEAIGAMEHPAIWLWYPWR MNPEPPTPHMPQRRALKNVHGAVFNDLTPVQKKRQEQMLYGVNIPETRQMKFEEQHPLLAGALRKLEGQPKGFPFWYRKY PTRRHAYEYRFSIPVEMLDGYNDDVKKALSKGMMSIQEKQFAQEAMYMERYAEHDFDTTSPAVLAVKRALKCRVLRNHLL TNPHNNIIKTVLANTERKLNHALRRLRKVDFKKYWEIIRDHDVQDILQPPNLVTYRQGSYWKYDWNAGLAISTNLADVMD PRGLNGCVETGRSRSEVARDLGLSYTRPLHENEKKQLSHQAVYYERLAKFKMEQPEAARAMERERFVRKFSGMFVKMDIR SGAPDFPSTYRRLLGTKVVRWASKRHGPN Q4GZ99 bS16m Trypanosoma brucei brucei 0.022077805 1 LEVO MQVTETVLARAVIKRRSPQLWGAPGAPIIRMRGHHVVWKFQSYDLVVEHTHKRRNSDIRLLHYLGKHCPHPQKSLWSPDT PVAQDRHLFMLTTVDIDAFKYWFGVKRCRLSMKPWALLAKAGLLPPSLTQNSKIMPKPLFDKESLMRYYLANRKDEDVMA REKYLNYENSMVKTEEERAAERPVAPYL Q384N9 uS17m Trypanosoma brucei brucei 0.035632726999999996 1 LEVO MLRRSLLAFPWWNFQTEHRQRCVLMYGGARTKNTHNANHRVFIKKYKRNAFPNRTRHHWAVSMTGVLSQRPRRMPWPYDL TSLIFNQPRQGSDKIGYVVGTSMLKTAVVATNHMVYYPKFNQRVSRTKRFFAHDEDLACVEGDLVHIKQCRKISKYKHYY VFSILEPNVEGRERLKLGLKAVPPPLFGYPVSRRIVKLNLTSTEGTQEKLAAAIQEHVQDAYRFSGPTPDQPRNRLADPV TFEDANNMIAPNAPAAAALDASDSPPLLDRGEYTEVEQDTRNKKGDDYWMNLQPKEKYDFKSFKKSP Q38DP8 bS18m Trypanosoma brucei brucei 0.036988691 1 LEVO MNRTGGSIYAHALSQFAVCRQPWNEYIGLLTKQDSTPYHTEPQEKPAYRGRKQGREGWLFGQQVQLHYHRFPDEQLITNL SRWRTGETVGDIAMQQFRNAQPFDIEDKDPQGVQRPSPEVYMKLNYKNPATISRFLTRTGHMYPADILPLNPEAVVKLRV AKAQAIRIGLYPRFGNPFWFRSQKFRPKAYQENYDPTTYSTKRTVEHFAYNWVQTDRIRRYFRELEAVHTSGSASARGSG GGTTAEHKQQDQFYSPENQPISLHRNNISYMEDVGRSVKNPTVPGLMSTKGMKKKFHNLYSSTSTKRMGFSNPTLGIKKV Q38AS2 uS21m Trypanosoma brucei brucei 0.023087888999999997 1 LEVO MLHTTRLWLGGYMMYHRKAMGTMKYSKWKGAHGGISHFYGRTPMVEEVRPNEPITLVDRRIMHYVHHSRLRHFQLFRSYQ EKSNSTECKLREGEMLRRRWHRRLQKSFIAFMQFKTMKVLEDQARLVNTYGQAAVNAALGDPWNATDNVARERKSAAVRR QVRALPMVNVVPKHVATMKQIHNDRFNYRWRVN Q580M9 mt-IF-3 Trypanosoma brucei brucei 0.041086285
residues 294-304 built as polyalanines
1 LEVO MMQRCSTSLSRLCFRRLLRTPLLVYSIPPTRDVPSGIAHCPLSCSMRMVTSSNDDEFVFDPTLSIQKDAAIHTAKKSFET IVLEYVPAHAPEEARQKVKSYLTQHPIDILITQPKVQITHLEDAESGAETKVSLSPCDLPEALQQARERGMNLVQMGARG DVAYCRIRRESTRILSLIHTELEALREQEEKQQGKGRGGVQAAAKMGELIDHTFRDAVDAHFVGWRSKKIVEDIRRRHPV KLTIKEFQSPECAIGKLREMCQAMQHYAQEKVIYHHFTSIVANDREASITFAPALPMAKSDSWKHIKYPGEKEWTNALRR MEDACRKSGRYGTYAKSNKLKLRSLGQTSYRVDKYGRKMD Q57WU2 mS22 Trypanosoma brucei brucei 0.073064141
residues 20-37 built as polyalanines
1 LEVO MLRRAYIQRRYPFNKRGPREHKSWKHHVLTEPPKPLQWRDPKVWTRDLSVMKSFDAPQWDLWQSRPRSEDMDEALQPFMD MPKSLKDRRYDIPWWANPFGAWYLQNILSLELLKLKSKTNAEKIATYRSYMRSLASGKDNTMSDDDVIRNIIKERWKTLE FGDRNAGYPCTFGDYIQFLNEWFKSLDEEGMQRLREHFDRRIRPLLAVMSPVDILWLEALTQNSPHNKEQLQRKIAFQTS LGTPEFFDMSKRLRYEINEDYKVRDELGPELFALWSKAPERWPPERLSKMYGLDFTLVRKILVWHHFKACYDACVEPDWS LPKRLFALEWIRDVRARKHGLFYGKMRFAEQKITFYSDRFLFRDLVNRREASYANVWEMDDPYRFLQTEQDYEDYWGDNY DVYRRMFPEMIGRTGEPVQQYGQMPIWAGPHRQHANKSEHNWMFAEIGVNVGHEALKKLELDPTNEKRRRFVIRQPDGTL RSAKMSEMRAWYWKEEWADFRFWAPQMEWGIENTPSQEQYQEHVPDTTDADFRKQRRIQSRPVKWFYESHYTRTGSFAGF QPLRFMQRRTEREVRWPDVINAAVQIQKRKPAAYIFKAIPEL Q38DR3 mS23 Trypanosoma brucei brucei 0.0367845 1 LEVO MRQCVVRRYKMPKNMGVAPRFDTWNEKYEPWEHMKRMGRLVGTGFYIPPEWYNHFRMFPPINHNFQQEKTLNPHNASEPT QDDTSTLSPERVALRDELARKSRLVASEGMRYYNIFWVRKPLDTMEKEYYELKRRGVDHGEAIRKVLQGFYSGLAVKKRV AAIQAEEAKLTGRFITMREATVVLGVLAKLHKEQLTPHQVSLLAKEQGETTQSGAKLTAIVSRTQPHVNKEASSPATSEA VGSSTEESLSADALASMLSEDGEQSAVGTRYQVEVKETANDSVRQLREKAEDQTGFPDWYTGESPTYSGTSCSRDGFALM KANK Q57VB2 mS26 Trypanosoma brucei brucei 0.051136684
residues 221-248 built as polyalanines
1 LEVO MMRSSSFCRRQIRPYYNLPSKSEHGRKMTGFLTPYRHWMWKQNELWRNVHEAQFEHLRRVYKRQWLESFRVNADEYIYKY NITKAAQLAQWECEMKEQEKKRIEARQMMDGRQALKKKHLDLLREFHERQFFFWYERASERLQNMNLINYVPHAQLREHI DKELDKYVAGKNEPYPLNFVGQMPFLEDGDGNIVEVPESLLSNHMAEHPDSTAKPHEPHTSSSISEAAAFEERMLRAMVS AKEEDLKEWLGDDSRALSETIDDISREEEEREADIRVARSMEETDAEREVSRRAYIERGKTGSRSIFRPPTVSEGAGGTP SAPAGDANTPMRRRKKGKLDRVHALQAHQDELLAKLSSQGLKEGVDASSVPERGKIVQSRGRIRDKAVIPTHEVLMQKPE LAAGSTPGARIQTKDMVDKMYHRGKYKKSGSGDKSDGEDL Q38DK6 mS34 Trypanosoma brucei brucei 0.02872818 1 LEVO MLRCARVALRADPLNGGSSMTLGSKGSKLSPEPHRRRMPWTAAKEYVPGVVLNARDKMVLDGVQLLDIESIDRASQLDPL EVLRAVVATREYNISTGKNIFQLASQATYNGRGQRFYRKEWQEGTYDKYVTLSAIDFDRDGNKGTAYGYITFHGETTTRP VQVDFADVPGWYMDFVEERAVPFTGIVPPPPSIGTDVPVDPHSYRLKAYPYYDAPNPPEFVERLLKDRGVLPDTPTETAD VDKDPTTSDGSVHYDGK Q57UK0 mS37 Trypanosoma brucei brucei 0.024757895999999998 1 LEVO MKSSDIFFAYRLTPVVFKSRQHDSGVNQYGLKPTNAYDYINPTNLINFGRGTTFDNLGVRRAGRGEIDSSPSHSGSPVFT QAKLIGLSGEEQLTMCQSETMALRLCMAKAGKETCERESRALDSCLGRVGHLRRAMSEACWEFNDWFIQNVSDNHTKPFQ HRPHDWRHFYAQEKLVRERQQNGHAYGRRPKQFSFGARYVKTDGYGKRPRLPYNK Q38C96 mS38 Trypanosoma brucei brucei 0.028240599999999998 1 LEVO MRAGCVACSRIPKLGIAALGSTTTSMQATCQETQELRCATTQMAPAVIFPLPPPLRGSYIDRKPTAASFNEHHATASFRH HMIASADVSHRPRHFYFASGTRNDTGTRSVKEGERKQLKQQTNVEVDSVAYGDQLDELSARWAAKFYGQVTFGPRNYPYP SSRWLARRFQMKKHRIIKRFRFRRYKLAAVANLPFAKMIRVGMLPELKSSKTKRGDVVDPTLSGQLVSAVKNTGEKRKGQ RTRPKSKYQV Q57VQ9 mS41 Trypanosoma brucei brucei 0.022421469 1 LEVO MLKRTLTVLDQTYGPHKSYKYTYMPDPRKLAPIETTQRSEIVPQSIRPPTSYVPNHETFLERADIHRLRPTSDFKASFKD WNDLFTCDKRQLRVRGIPRMTRDAIRTAVQAFQNGNPPERFDTKEEWLYYKQFKTVDYSYRVIPELPEKYRPHQSGIDQA PLPDYREINKMPQWAECEERRQSKKTV Q389L3 mS42 Trypanosoma brucei brucei 0.029748666 1 LEVO MRLCRRLSYHAYVPKGASVQMGETFMPSNIATAVFRETEAAAARADKTKEETGFFSQPRLNYPVSSGIPALFSKDQFDMQ YSLFHRDVVETLNRHTLGTPLEGHNLETVIRKTSFDATQAVAHTAASEHFNYCFFYKSLRPWGTAPPPRLREALQLQYGT NGSADAMDEVRRIVWVTAASHQERCGWVYLVWSGVHFDVVEFPHGSCPIASDLIPLLALNVHESAYILDYGTSGLKQYVE NYFKACNWPLAERYYLMAIGQVV Q586A1 1.15.1.1 mS43 Trypanosoma brucei brucei 0.04859041
residues 27-35 built as polyalanines
1 LEVO MLRRTVTSLRNARELHRLLPALLPLLDPPVPTGASVCAAHLIVATGHVSKQREPHMSNCPVLERKIPLSEIASDDNFLKH PCVPCLKHRINFLASEDFCYDFVERCGCGTDGALPPEWRCIVERQFGSMAALVEELVIHASNRREAGWTWLVYDAQQAGE RPLLVVNMPAQRSPLLLGLWPLAVVNVTEAVLVEAVRAESSGSVAAAPPPPWCRAARASLYDTKAAAEAFAMTAPMSEGV GKKLSEIREKVARDAVSRMNWGFILQQLKKAETYYASSDRGEKIRVHRMKLEREAVTKAMSGLRDSGATFLTHDTVEVTT TPSANSEPSSPERVPGVQAKQPQTEGMDPCKNKASAEPDPKCTQLPDGTWQYSYRNGDVTLLKPDGTRVFRKRELTTTAY PDGSMLFQYANNTSILDRADGVRVTTFEDGTTKEEMIRR Q585I1 mS47 Trypanosoma brucei brucei 0.137935 1 LEVO MERRRLLHDGRWFTPCVLYGSARRGLKTLDVREYRPLAMPIEFRFYQRYANHPNRQSGIQFLTHYNTHQRFRVNKDYIDY MHWGKEQGQARLPHRHQRVAFDFNDQLHPTRIGTPEDGGNANHCYPEDGEDGSYAWFASQDPTFGHHPDLSSSFDPNYRV FSHPEHWNKMFTKRRPGEGDIDLSVLPSRSLLGPLMAHSDTKGIPYFKVDNRGHSNGRVPGVNAPFFGEFDQKMMQAMSR PLNANRTITGNDGRFSKTIMINEPQCNQALSAKTASELSKEIDKATNAVYSKLSVLEAAQSGLTDYFCGGLNFEIVGFEL HMAAMLRERAAAILERSGAGGLPSASSATLSSSSTTRRCAMLLEKADEREVNKLLRDASRYEDRVDDALRQHASLIWRVY TAPRPLMTLTNGKCRGTGCGLSLFAKYCALKDSSEFIFDGPNVGITPYGGMTRLLARPETSLKYPGLAEFVVLTGASLFA GDALRLGWTDLFTTIPDMTYHIKEWFDTTEHMHNDAVAWQLGHLLETCFKMKESHSSAMERAAITPTRARWVEDAFADQP SVNDIMRTLTEIEQLPFQSTHNTSDESHITPYTLGSVAAGVQRLGEHRLRYTLSPWDITPPEDSVVLKHTSEMFRAYVLE RRGATDVVTHRDAERAAAWSQQRQREYDAYCSLKEAPHPRHVYARLEGCEGKIVSFEFVFEISCRRSGPQGTDEVLQTTT ISRLKSRILDALGMPRDRNIDLGWYLPTLDTCPIHSDEELMQVLHTDPGIEDPKEKLRYPPIYFIVKRCTLYFSEWAYAV KHQLLLQSPFALRAAFGLLQEVRGDGAAENVMPLAETLGTEFKYFTRLMRRPDFYRVGVHTDKSVEKWEEIKEERRHNIH HTHRPTRPLPDFEEVFERDVEIDGHRFVLRPRWNPRTLQDVDDSDILRLRAPLTYDMDSTAALHVPTHCGKASRLAGMLQ DAGGVQVLDGLGEVDDKGEPKVPPLQSNASVPTNVSFYEMARHPWEDRASSWRRDGFTEGSLEYFESQYRSAERAVYDEE GRGVRNYWPSRDAVEGIAQEEENDAQLLQERLFNTLETAGTSVEPWARNLRLNATTGKFGYKTEIATQEEKIYDDEYYRW FIQPGRHPNPSGLTLNGRKGQFEEGHSRDEELERMWRKVVADGNNDFAATTSGMPVYDEDAKNAEDSYAAGDDVDVVTTD ANVPVDGDDSS Q383R4 9S rRNA Trypanosoma brucei brucei 0.198481422 1 UAAAUUAUGGUCAAUUGUUAGUAUUCAUAUUAAUUUUUUUAAAUGUUUUAUCAUUUUAUAAAGGUUUAUUUUUGAAAGAU UUUUUGUAUAAAAUUUUAGGAAUAGUUAAUAAUAAUUUAUAAUUUUGAUUAGAUUGUUUUGUUAAUGCUAUUAGAUGGGU GUGGAAAAAUAAAAAAAAUAAUUAAUAUAUAUCAAUAAUAAAUUAAAUUAAUCUAUUAGUCAGAAAUGGAUGCCAGCCGU UGCGGUAAUUUCUAUGCUUUUAAAUAUUAUACAAUUAUCAUAUUAAAUUGUUAAGUGUUGAUUUAACCAAUAAAAAUAUA AAUAAUUUUUAUUUGUUUUUAAACACCAUUAGGUAUAUGCAAAUAUAAAAUUAUAGUAAUUAUAAAUUAUAUUAUAUUAU AUUUAUUCAUAUAAUUAAUAGGAUAAUAUUUGUAGUUUUUGAUACCAUGAUAAGGAUUAUAAAUUGAAAGUGGUAAUAUC AUAAUCAAAAUUUAUUAUUUAUAUUAAAUAUGUAUGUGUAGAUAAAAUAAGAAAUUAAAAAGGUAUUGUUGCCCACCAAU UUUUAUAAUAAAAAUAACGUGCAGUAAUUAAUAUAUUUAUAAAAAUAUAUUUUUUUUUUUU M94286.1 Unknown protein Trypanosoma brucei brucei 0.00274137
unassigned UNK residues
1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Unknown protein Trypanosoma brucei brucei 0.0006988540000000001
unassigned UNK residues
1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Unknown protein Trypanosoma brucei brucei 0.0046136779999999995 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Unknown protein Trypanosoma brucei brucei 0.0037626289999999995
unassigned UNK residues
1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) ZINC ION 6.5409e-05 4 ZN MAGNESIUM ION 2.4305e-05 36 MG SPERMIDINE 0.000145246 2 SPD SPERMINE 0.00020234 1 SPM singleParticle particle 7.4 ETHANE-PROPANE 98 278 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON III (4k x 4k) 40.0 1
initial model from 2D class averages in EMAN
 FOURIER SPACE 3.27 FSC 0.143 CUT-OFF 31911 OTHER MAXIMUM LIKELIHOOD RELION RELION emd_0232.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.26455936 0.51369876 0.0014350519 0.017512508 1.39 1.39 1.39 0.0115 AUTHOR map of the T. brucei mitoribosome small subunit body in complex with mt-IF3 AB INITIO MODEL
We used Coot and O for initial model building and refined the structure using Phenix
41.399999999999999 emd_0232_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.045552142 0.11095773 0.0004971849 0.008147534 1.39 1.39 1.39 AUTHOR half map (odd) of the T. brucei mitoribosome small subunit body in complex with mt-IF3 emd_0232_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 444.8 444.8 444.8 90.0 90.0 90.0 X Y Z -0.041323554 0.11026068 0.0004966813 0.008152673 1.39 1.39 1.39 AUTHOR half map (even) of the T. brucei mitoribosome small subunit body in complex with mt-IF3