<emd emdb_id="EMD-0113" version="3.0.0.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_1/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-12-26</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-07-06</deposition>
            <header_release>2018-08-22</header_release>
            <map_release>2018-12-19</map_release>
            <update>2018-12-26</update>
        </key_dates>
        <title>C9 oligomer region of the Membrane Attack Complex in the open conformation</title>
        <authors_list>
            <author>Menny A</author>
            <author>Serna M</author>
            <author>Boyd CB</author>
            <author>Gardener S</author>
            <author>Joseph AP</author>
            <author>Topf M</author>
            <author>Bubeck D</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Menny A</author>
                    <author order="2">Serna M</author>
                    <author order="3">Boyd CM</author>
                    <author order="4">Gardner S</author>
                    <author order="5">Joseph AP</author>
                    <author order="6">Morgan BP</author>
                    <author order="7">Topf M</author>
                    <author order="8">Brooks NJ</author>
                    <author order="9">Bubeck D</author>
                    <title>CryoEM reveals how the complement membrane attack complex ruptures lipid bilayers.</title>
                    <journal_abbreviation>Nat Commun</journal_abbreviation>
                    <country>UK</country>
                    <volume>9</volume>
                    <first_page>5316</first_page>
                    <last_page>5316</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">30552328</external_references>
                    <external_references type="DOI">doi:10.1038/s41467-018-07653-5</external_references>
                    <external_references type="ISSN">2041-1723</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-0106</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Full map of the open conformation</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0107</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Full map of the closed conformation</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0110</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Consensus map</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0109</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Map of the asymmetric region of the closed conformation</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0111</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Map of the asymmetric region of the open conformation</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0112</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Map of the hinge region of the open conformation</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-0113</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Membrane Attack Complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Membrane Attack Complex</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.69</theoretical>
                </molecular_weight>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>C9</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details />
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_magnification>59000.</nominal_magnification>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <alignment_procedure>
                        <coma_free />
                    </alignment_procedure>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <number_grids_imaged>8</number_grids_imaged>
                            <number_real_images>13009</number_real_images>
                            <average_exposure_time units="s">2.0</average_exposure_time>
                            <average_electron_dose_per_image units="e/&#8491;^2">50.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>288366</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                            <version>4</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="EMDB MAP">
                    <emdb_id>EMD-3134</emdb_id>
                    <details>Low pass filtered to 60 A</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">4.4</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <number_images_used>81968</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="186625">
        <file>emd_0113.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>360</col>
            <row>360</row>
            <sec>360</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>360</x>
            <y>360</y>
            <z>360</z>
        </spacing>
        <cell>
            <a units="&#8491;">498.24</a>
            <b units="&#8491;">498.24</b>
            <c units="&#8491;">498.24</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.10848322</minimum>
            <maximum>0.27613464</maximum>
            <average>-0.00067229173</average>
            <std>0.0072512766</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">1.384</x>
            <y units="&#8491;">1.384</y>
            <z units="&#8491;">1.384</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.07</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-0113::::</label>
    </map>
</emd>